Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_59

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_58 and PfGW456L13_59 are separated by 127 nucleotidesPfGW456L13_59 and PfGW456L13_60 are separated by 65 nucleotidesPfGW456L13_60 and PfGW456L13_61 are separated by 187 nucleotides PfGW456L13_58 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 68,061 to 69,356 _58 PfGW456L13_59 - Sensor histidine kinase/response regulator, at 69,484 to 72,234 _59 PfGW456L13_60 - membrane protein, MarC family, at 72,300 to 72,896 _60 PfGW456L13_61 - hypothetical protein, at 73,084 to 73,407 _61 Position (kb) 69 70 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 69.355 kb on - strandat 69.355 kb on - strandat 69.355 kb on - strandat 69.355 kb on - strandat 69.359 kb on + strandat 69.359 kb on + strandat 69.359 kb on + strandat 69.360 kb on - strandat 69.389 kb on + strandat 69.390 kb on - strandat 69.400 kb on + strandat 69.421 kb on + strandat 69.421 kb on + strandat 69.422 kb on - strandat 69.422 kb on - strandat 69.422 kb on - strandat 69.423 kb on + strandat 69.423 kb on + strandat 69.423 kb on + strandat 69.424 kb on - strandat 69.424 kb on - strandat 69.424 kb on - strandat 69.424 kb on - strandat 69.439 kb on + strandat 69.439 kb on + strandat 69.440 kb on - strandat 69.479 kb on + strandat 69.479 kb on + strandat 69.480 kb on - strandat 69.519 kb on - strandat 69.607 kb on + strandat 69.607 kb on + strandat 69.608 kb on - strandat 69.754 kb on + strandat 69.754 kb on + strandat 69.754 kb on + strandat 69.755 kb on - strandat 69.881 kb on + strand, within PfGW456L13_59at 69.882 kb on - strand, within PfGW456L13_59at 69.882 kb on - strand, within PfGW456L13_59at 69.882 kb on - strand, within PfGW456L13_59at 69.882 kb on - strand, within PfGW456L13_59at 69.919 kb on + strand, within PfGW456L13_59at 69.919 kb on + strand, within PfGW456L13_59at 69.920 kb on - strand, within PfGW456L13_59at 69.920 kb on - strand, within PfGW456L13_59at 69.920 kb on - strand, within PfGW456L13_59at 69.920 kb on - strand, within PfGW456L13_59at 69.976 kb on + strand, within PfGW456L13_59at 69.976 kb on + strand, within PfGW456L13_59at 69.977 kb on - strand, within PfGW456L13_59at 70.030 kb on + strandat 70.179 kb on - strand, within PfGW456L13_59at 70.179 kb on - strand, within PfGW456L13_59at 70.179 kb on - strand, within PfGW456L13_59at 70.311 kb on + strand, within PfGW456L13_59at 70.336 kb on + strand, within PfGW456L13_59at 70.337 kb on - strand, within PfGW456L13_59at 70.346 kb on + strand, within PfGW456L13_59at 70.759 kb on + strand, within PfGW456L13_59at 70.764 kb on - strand, within PfGW456L13_59at 71.522 kb on - strand, within PfGW456L13_59at 71.531 kb on + strand, within PfGW456L13_59at 71.531 kb on + strand, within PfGW456L13_59at 71.531 kb on + strand, within PfGW456L13_59at 71.531 kb on + strand, within PfGW456L13_59at 71.531 kb on + strand, within PfGW456L13_59at 71.532 kb on - strand, within PfGW456L13_59at 71.532 kb on - strand, within PfGW456L13_59at 71.532 kb on - strand, within PfGW456L13_59at 72.085 kb on - strandat 72.100 kb on - strandat 72.259 kb on + strandat 72.259 kb on + strandat 72.259 kb on + strandat 72.260 kb on - strandat 72.325 kb on - strandat 72.346 kb on - strandat 72.393 kb on + strand, within PfGW456L13_60at 72.430 kb on + strand, within PfGW456L13_60at 72.465 kb on + strand, within PfGW456L13_60at 72.465 kb on + strand, within PfGW456L13_60at 72.465 kb on + strand, within PfGW456L13_60at 72.465 kb on + strand, within PfGW456L13_60at 72.466 kb on - strand, within PfGW456L13_60at 72.466 kb on - strand, within PfGW456L13_60at 72.466 kb on - strand, within PfGW456L13_60at 72.504 kb on - strand, within PfGW456L13_60at 72.743 kb on + strand, within PfGW456L13_60at 72.743 kb on + strand, within PfGW456L13_60at 72.744 kb on - strand, within PfGW456L13_60at 73.028 kb on - strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.156 kb on + strand, within PfGW456L13_61at 73.157 kb on - strand, within PfGW456L13_61

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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69,355 - +0.6
69,355 - +0.1
69,355 - +0.4
69,355 - +0.1
69,359 + -1.0
69,359 + -1.1
69,359 + +0.3
69,360 - +0.9
69,389 + +0.1
69,390 - +0.5
69,400 + +0.8
69,421 + +1.4
69,421 + +0.3
69,422 - -1.5
69,422 - -1.3
69,422 - +0.1
69,423 + +1.3
69,423 + +0.0
69,423 + -0.3
69,424 - +0.2
69,424 - -0.1
69,424 - +0.5
69,424 - -0.4
69,439 + -0.3
69,439 + +0.2
69,440 - +2.5
69,479 + -1.2
69,479 + +0.2
69,480 - -0.1
69,519 - +0.2
69,607 + +0.2
69,607 + -0.8
69,608 - +0.4
69,754 + +1.2
69,754 + +2.2
69,754 + +1.2
69,755 - -0.1
69,881 + PfGW456L13_59 0.14 -0.8
69,882 - PfGW456L13_59 0.14 +0.2
69,882 - PfGW456L13_59 0.14 +0.7
69,882 - PfGW456L13_59 0.14 +0.2
69,882 - PfGW456L13_59 0.14 -0.4
69,919 + PfGW456L13_59 0.16 -2.0
69,919 + PfGW456L13_59 0.16 +0.0
69,920 - PfGW456L13_59 0.16 -1.3
69,920 - PfGW456L13_59 0.16 -0.4
69,920 - PfGW456L13_59 0.16 -0.7
69,920 - PfGW456L13_59 0.16 -1.8
69,976 + PfGW456L13_59 0.18 -1.4
69,976 + PfGW456L13_59 0.18 -0.4
69,977 - PfGW456L13_59 0.18 -1.7
70,030 + +0.2
70,179 - PfGW456L13_59 0.25 -1.7
70,179 - PfGW456L13_59 0.25 -0.4
70,179 - PfGW456L13_59 0.25 -0.7
70,311 + PfGW456L13_59 0.30 -0.0
70,336 + PfGW456L13_59 0.31 -0.4
70,337 - PfGW456L13_59 0.31 +0.4
70,346 + PfGW456L13_59 0.31 +0.2
70,759 + PfGW456L13_59 0.46 +0.7
70,764 - PfGW456L13_59 0.47 -0.6
71,522 - PfGW456L13_59 0.74 -0.8
71,531 + PfGW456L13_59 0.74 -1.4
71,531 + PfGW456L13_59 0.74 -0.8
71,531 + PfGW456L13_59 0.74 -0.4
71,531 + PfGW456L13_59 0.74 -2.0
71,531 + PfGW456L13_59 0.74 -0.8
71,532 - PfGW456L13_59 0.74 +0.8
71,532 - PfGW456L13_59 0.74 -1.8
71,532 - PfGW456L13_59 0.74 -0.8
72,085 - +0.2
72,100 - +0.2
72,259 + -0.1
72,259 + +0.2
72,259 + -0.2
72,260 - +0.1
72,325 - +0.2
72,346 - +0.8
72,393 + PfGW456L13_60 0.16 +1.0
72,430 + PfGW456L13_60 0.22 +0.9
72,465 + PfGW456L13_60 0.28 +0.3
72,465 + PfGW456L13_60 0.28 +0.6
72,465 + PfGW456L13_60 0.28 +0.2
72,465 + PfGW456L13_60 0.28 -0.4
72,466 - PfGW456L13_60 0.28 -0.8
72,466 - PfGW456L13_60 0.28 +0.1
72,466 - PfGW456L13_60 0.28 -1.3
72,504 - PfGW456L13_60 0.34 -0.2
72,743 + PfGW456L13_60 0.74 -0.1
72,743 + PfGW456L13_60 0.74 +0.3
72,744 - PfGW456L13_60 0.74 +0.1
73,028 - -0.7
73,061 + +0.2
73,061 + -0.5
73,061 + +0.3
73,061 + +0.9
73,062 - -0.4
73,062 - +0.6
73,062 - -1.7
73,062 - -2.0
73,156 + PfGW456L13_61 0.22 -0.4
73,157 - PfGW456L13_61 0.23 -0.0

Or see this region's nucleotide sequence