Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_566

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_564 and PfGW456L13_565 are separated by 154 nucleotidesPfGW456L13_565 and PfGW456L13_566 overlap by 1 nucleotidesPfGW456L13_566 and PfGW456L13_567 are separated by 124 nucleotides PfGW456L13_564 - FIG00953482: hypothetical protein, at 660,548 to 662,509 _564 PfGW456L13_565 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 662,664 to 663,476 _565 PfGW456L13_566 - Tryptophan synthase beta chain (EC 4.2.1.20), at 663,476 to 664,696 _566 PfGW456L13_567 - Glycine cleavage system transcriptional activator, at 664,821 to 665,714 _567 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 662.496 kb on + strandat 662.510 kb on + strandat 662.551 kb on - strandat 662.569 kb on + strandat 662.569 kb on + strandat 662.570 kb on - strandat 662.570 kb on - strandat 662.570 kb on - strandat 662.647 kb on + strandat 662.648 kb on - strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.660 kb on - strandat 662.660 kb on - strandat 662.947 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.173 kb on - strand, within PfGW456L13_565at 663.173 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.600 kb on - strand, within PfGW456L13_566at 663.600 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 664.116 kb on + strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.498 kb on - strand, within PfGW456L13_566at 664.629 kb on + strandat 664.730 kb on + strandat 664.739 kb on - strandat 664.739 kb on - strandat 664.753 kb on + strandat 664.949 kb on - strand, within PfGW456L13_567at 664.969 kb on + strand, within PfGW456L13_567at 664.970 kb on - strand, within PfGW456L13_567at 665.147 kb on + strand, within PfGW456L13_567at 665.148 kb on - strand, within PfGW456L13_567at 665.257 kb on + strand, within PfGW456L13_567at 665.257 kb on + strand, within PfGW456L13_567at 665.258 kb on - strand, within PfGW456L13_567at 665.258 kb on - strand, within PfGW456L13_567at 665.315 kb on + strand, within PfGW456L13_567at 665.350 kb on - strand, within PfGW456L13_567at 665.475 kb on + strand, within PfGW456L13_567at 665.475 kb on + strand, within PfGW456L13_567at 665.475 kb on + strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.476 kb on - strand, within PfGW456L13_567at 665.499 kb on + strand, within PfGW456L13_567at 665.499 kb on + strand, within PfGW456L13_567at 665.500 kb on - strand, within PfGW456L13_567at 665.500 kb on - strand, within PfGW456L13_567at 665.502 kb on + strand, within PfGW456L13_567at 665.502 kb on + strand, within PfGW456L13_567at 665.503 kb on - strand, within PfGW456L13_567at 665.503 kb on - strand, within PfGW456L13_567

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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662,496 + +0.7
662,510 + -0.5
662,551 - -0.2
662,569 + -0.9
662,569 + +0.2
662,570 - +0.1
662,570 - -1.7
662,570 - +0.4
662,647 + -0.4
662,648 - -0.7
662,659 + +0.2
662,659 + -2.3
662,659 + -0.2
662,659 + -1.3
662,660 - -0.3
662,660 - +0.8
662,947 - PfGW456L13_565 0.35 +0.8
662,951 - PfGW456L13_565 0.35 +0.7
662,951 - PfGW456L13_565 0.35 -0.7
662,951 - PfGW456L13_565 0.35 -0.1
662,951 - PfGW456L13_565 0.35 +0.5
663,152 - PfGW456L13_565 0.60 -1.7
663,152 - PfGW456L13_565 0.60 -0.0
663,152 - PfGW456L13_565 0.60 -2.1
663,152 - PfGW456L13_565 0.60 +0.0
663,152 - PfGW456L13_565 0.60 -0.9
663,152 - PfGW456L13_565 0.60 -1.5
663,173 - PfGW456L13_565 0.63 -1.6
663,173 - PfGW456L13_565 0.63 -1.8
663,389 - PfGW456L13_565 0.89 +0.6
663,389 - PfGW456L13_565 0.89 -0.9
663,389 - PfGW456L13_565 0.89 +0.0
663,600 - PfGW456L13_566 0.10 +1.3
663,600 - PfGW456L13_566 0.10 -0.0
663,703 - PfGW456L13_566 0.19 -2.1
663,703 - PfGW456L13_566 0.19 -2.6
663,703 - PfGW456L13_566 0.19 -2.6
663,703 - PfGW456L13_566 0.19 -1.5
664,116 + PfGW456L13_566 0.52 -0.7
664,117 - PfGW456L13_566 0.52 +0.4
664,117 - PfGW456L13_566 0.52 -1.4
664,117 - PfGW456L13_566 0.52 -0.4
664,117 - PfGW456L13_566 0.52 -0.7
664,117 - PfGW456L13_566 0.52 +0.9
664,276 - PfGW456L13_566 0.66 -1.7
664,276 - PfGW456L13_566 0.66 -0.4
664,276 - PfGW456L13_566 0.66 -1.0
664,276 - PfGW456L13_566 0.66 -0.7
664,276 - PfGW456L13_566 0.66 -0.4
664,276 - PfGW456L13_566 0.66 -0.6
664,276 - PfGW456L13_566 0.66 -0.2
664,276 - PfGW456L13_566 0.66 -0.1
664,276 - PfGW456L13_566 0.66 +0.1
664,276 - PfGW456L13_566 0.66 -0.3
664,453 - PfGW456L13_566 0.80 +0.1
664,453 - PfGW456L13_566 0.80 +1.9
664,453 - PfGW456L13_566 0.80 +0.2
664,453 - PfGW456L13_566 0.80 -1.1
664,498 - PfGW456L13_566 0.84 -0.9
664,629 + +1.7
664,730 + -0.0
664,739 - -0.4
664,739 - -0.2
664,753 + +0.5
664,949 - PfGW456L13_567 0.14 +0.6
664,969 + PfGW456L13_567 0.17 -0.9
664,970 - PfGW456L13_567 0.17 +0.0
665,147 + PfGW456L13_567 0.36 -0.1
665,148 - PfGW456L13_567 0.37 -0.0
665,257 + PfGW456L13_567 0.49 -0.1
665,257 + PfGW456L13_567 0.49 +0.2
665,258 - PfGW456L13_567 0.49 +0.3
665,258 - PfGW456L13_567 0.49 +0.4
665,315 + PfGW456L13_567 0.55 +0.2
665,350 - PfGW456L13_567 0.59 -0.8
665,475 + PfGW456L13_567 0.73 +0.6
665,475 + PfGW456L13_567 0.73 -0.8
665,475 + PfGW456L13_567 0.73 -0.5
665,476 - PfGW456L13_567 0.73 +0.4
665,476 - PfGW456L13_567 0.73 +0.4
665,476 - PfGW456L13_567 0.73 -0.2
665,476 - PfGW456L13_567 0.73 -0.1
665,476 - PfGW456L13_567 0.73 +0.3
665,476 - PfGW456L13_567 0.73 +0.4
665,499 + PfGW456L13_567 0.76 +0.0
665,499 + PfGW456L13_567 0.76 +0.3
665,500 - PfGW456L13_567 0.76 -0.7
665,500 - PfGW456L13_567 0.76 +0.5
665,502 + PfGW456L13_567 0.76 -0.1
665,502 + PfGW456L13_567 0.76 -0.9
665,503 - PfGW456L13_567 0.76 -0.7
665,503 - PfGW456L13_567 0.76 -1.0

Or see this region's nucleotide sequence