Experiment: Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4476 and PfGW456L13_4477 overlap by 4 nucleotides PfGW456L13_4477 and PfGW456L13_4478 overlap by 4 nucleotides PfGW456L13_4478 and PfGW456L13_4479 are separated by 73 nucleotides
PfGW456L13_4476 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 5,005,519 to 5,006,445
_4476
PfGW456L13_4477 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 5,006,442 to 5,007,146
_4477
PfGW456L13_4478 - Lactam utilization protein LamB, at 5,007,143 to 5,007,895
_4478
PfGW456L13_4479 - Sialic acid transporter (permease) NanT, at 5,007,969 to 5,009,255
_4479
Position (kb)
5006
5007
5008 Strain fitness (log2 ratio)
-2
-1
0
1 at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.471 kb on + strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.472 kb on - strand at 5005.476 kb on - strand at 5005.521 kb on - strand at 5005.744 kb on - strand, within PfGW456L13_4476 at 5005.960 kb on + strand, within PfGW456L13_4476 at 5005.980 kb on - strand, within PfGW456L13_4476 at 5005.980 kb on - strand, within PfGW456L13_4476 at 5006.106 kb on - strand, within PfGW456L13_4476 at 5006.545 kb on + strand, within PfGW456L13_4477 at 5006.613 kb on + strand, within PfGW456L13_4477 at 5006.768 kb on - strand, within PfGW456L13_4477 at 5006.975 kb on - strand, within PfGW456L13_4477 at 5006.995 kb on + strand, within PfGW456L13_4477 at 5006.995 kb on + strand, within PfGW456L13_4477 at 5006.996 kb on - strand, within PfGW456L13_4477 at 5007.376 kb on - strand, within PfGW456L13_4478 at 5007.376 kb on - strand, within PfGW456L13_4478 at 5007.489 kb on + strand, within PfGW456L13_4478 at 5007.489 kb on + strand, within PfGW456L13_4478 at 5007.490 kb on - strand, within PfGW456L13_4478 at 5007.549 kb on + strand, within PfGW456L13_4478 at 5007.549 kb on + strand, within PfGW456L13_4478 at 5007.550 kb on - strand, within PfGW456L13_4478 at 5007.550 kb on - strand, within PfGW456L13_4478 at 5007.550 kb on - strand, within PfGW456L13_4478 at 5007.550 kb on - strand, within PfGW456L13_4478 at 5007.573 kb on + strand, within PfGW456L13_4478 at 5007.573 kb on + strand, within PfGW456L13_4478 at 5007.574 kb on - strand, within PfGW456L13_4478 at 5007.661 kb on - strand, within PfGW456L13_4478 at 5007.661 kb on - strand, within PfGW456L13_4478 at 5007.700 kb on - strand, within PfGW456L13_4478 at 5007.881 kb on + strand at 5007.882 kb on - strand at 5007.882 kb on - strand at 5007.910 kb on + strand at 5007.910 kb on + strand at 5007.911 kb on - strand at 5007.911 kb on - strand at 5007.911 kb on - strand at 5007.911 kb on - strand at 5007.911 kb on - strand at 5007.917 kb on + strand at 5007.918 kb on - strand at 5007.939 kb on + strand at 5007.939 kb on + strand at 5007.940 kb on - strand at 5007.940 kb on - strand at 5007.940 kb on - strand at 5007.940 kb on - strand at 5007.964 kb on - strand at 5007.970 kb on + strand at 5008.066 kb on - strand at 5008.141 kb on + strand, within PfGW456L13_4479 at 5008.141 kb on + strand, within PfGW456L13_4479 at 5008.142 kb on - strand, within PfGW456L13_4479
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml remove 5,005,471 + -0.4 5,005,471 + +0.5 5,005,471 + +0.1 5,005,471 + -0.2 5,005,471 + +0.3 5,005,471 + +0.9 5,005,471 + +0.1 5,005,471 + -0.7 5,005,471 + -0.2 5,005,471 + +1.4 5,005,471 + +0.2 5,005,472 - +0.1 5,005,472 - -0.3 5,005,472 - +1.6 5,005,472 - -0.2 5,005,472 - -2.2 5,005,472 - +0.4 5,005,472 - -1.7 5,005,472 - -0.0 5,005,472 - +0.7 5,005,476 - -0.9 5,005,521 - -0.1 5,005,744 - PfGW456L13_4476 0.24 -1.1 5,005,960 + PfGW456L13_4476 0.48 -0.7 5,005,980 - PfGW456L13_4476 0.50 -0.2 5,005,980 - PfGW456L13_4476 0.50 +0.1 5,006,106 - PfGW456L13_4476 0.63 -2.3 5,006,545 + PfGW456L13_4477 0.15 -0.3 5,006,613 + PfGW456L13_4477 0.24 -1.0 5,006,768 - PfGW456L13_4477 0.46 -0.3 5,006,975 - PfGW456L13_4477 0.76 -1.5 5,006,995 + PfGW456L13_4477 0.78 +0.6 5,006,995 + PfGW456L13_4477 0.78 -1.9 5,006,996 - PfGW456L13_4477 0.79 -0.2 5,007,376 - PfGW456L13_4478 0.31 -0.5 5,007,376 - PfGW456L13_4478 0.31 -0.1 5,007,489 + PfGW456L13_4478 0.46 -0.2 5,007,489 + PfGW456L13_4478 0.46 +0.4 5,007,490 - PfGW456L13_4478 0.46 -1.0 5,007,549 + PfGW456L13_4478 0.54 -0.2 5,007,549 + PfGW456L13_4478 0.54 +0.8 5,007,550 - PfGW456L13_4478 0.54 +0.4 5,007,550 - PfGW456L13_4478 0.54 -0.0 5,007,550 - PfGW456L13_4478 0.54 -0.4 5,007,550 - PfGW456L13_4478 0.54 -0.4 5,007,573 + PfGW456L13_4478 0.57 +0.8 5,007,573 + PfGW456L13_4478 0.57 -0.4 5,007,574 - PfGW456L13_4478 0.57 -0.4 5,007,661 - PfGW456L13_4478 0.69 -0.4 5,007,661 - PfGW456L13_4478 0.69 -1.2 5,007,700 - PfGW456L13_4478 0.74 -0.4 5,007,881 + -2.2 5,007,882 - +1.7 5,007,882 - -0.8 5,007,910 + -0.5 5,007,910 + +0.8 5,007,911 - +0.2 5,007,911 - -0.7 5,007,911 - +1.2 5,007,911 - -0.3 5,007,911 - -0.1 5,007,917 + -1.0 5,007,918 - -0.3 5,007,939 + +0.3 5,007,939 + +0.0 5,007,940 - -0.1 5,007,940 - +0.7 5,007,940 - -0.4 5,007,940 - -0.7 5,007,964 - +0.6 5,007,970 + +0.4 5,008,066 - -0.9 5,008,141 + PfGW456L13_4479 0.13 +0.2 5,008,141 + PfGW456L13_4479 0.13 -0.6 5,008,142 - PfGW456L13_4479 0.13 +0.7
Or see this region's nucleotide sequence