Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4424

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4423 and PfGW456L13_4424 are separated by 427 nucleotidesPfGW456L13_4424 and PfGW456L13_4425 are separated by 40 nucleotidesPfGW456L13_4425 and PfGW456L13_4426 are separated by 169 nucleotidesPfGW456L13_4426 and PfGW456L13_4427 are separated by 0 nucleotides PfGW456L13_4423 - ATP-dependent DNA helicase RecQ, at 4,935,206 to 4,937,332 _4423 PfGW456L13_4424 - FIG00953416: hypothetical protein, at 4,937,760 to 4,938,347 _4424 PfGW456L13_4425 - FIG039061: hypothetical protein related to heme utilization, at 4,938,388 to 4,938,753 _4425 PfGW456L13_4426 - hypothetical protein, at 4,938,923 to 4,939,207 _4426 PfGW456L13_4427 - T1SS associated transglutaminase-like cysteine proteinase LapP, at 4,939,208 to 4,939,717 _4427 Position (kb) 4937 4938 4939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4936.873 kb on - strand, within PfGW456L13_4423at 4936.966 kb on + strand, within PfGW456L13_4423at 4936.966 kb on + strand, within PfGW456L13_4423at 4936.998 kb on + strand, within PfGW456L13_4423at 4936.998 kb on + strand, within PfGW456L13_4423at 4936.998 kb on + strand, within PfGW456L13_4423at 4936.998 kb on + strand, within PfGW456L13_4423at 4936.998 kb on + strand, within PfGW456L13_4423at 4936.999 kb on - strand, within PfGW456L13_4423at 4937.108 kb on - strand, within PfGW456L13_4423at 4937.398 kb on + strandat 4937.405 kb on + strandat 4937.406 kb on - strandat 4937.406 kb on - strandat 4937.406 kb on - strandat 4937.473 kb on + strandat 4937.474 kb on - strandat 4937.474 kb on - strandat 4937.474 kb on - strandat 4937.531 kb on + strandat 4937.531 kb on + strandat 4937.531 kb on + strandat 4937.531 kb on + strandat 4937.531 kb on + strandat 4937.531 kb on + strandat 4937.532 kb on - strandat 4937.532 kb on - strandat 4937.532 kb on - strandat 4937.532 kb on - strandat 4937.532 kb on - strandat 4937.536 kb on - strandat 4937.684 kb on + strandat 4937.684 kb on + strandat 4937.684 kb on + strandat 4937.720 kb on + strandat 4937.779 kb on + strandat 4937.835 kb on + strand, within PfGW456L13_4424at 4937.836 kb on - strand, within PfGW456L13_4424at 4937.836 kb on - strand, within PfGW456L13_4424at 4937.836 kb on - strand, within PfGW456L13_4424at 4937.934 kb on + strand, within PfGW456L13_4424at 4937.935 kb on - strand, within PfGW456L13_4424at 4937.935 kb on - strand, within PfGW456L13_4424at 4938.109 kb on + strand, within PfGW456L13_4424at 4938.259 kb on + strand, within PfGW456L13_4424at 4938.259 kb on + strand, within PfGW456L13_4424at 4938.260 kb on - strand, within PfGW456L13_4424at 4938.260 kb on - strand, within PfGW456L13_4424at 4938.260 kb on - strand, within PfGW456L13_4424at 4938.288 kb on + strand, within PfGW456L13_4424at 4938.289 kb on - strandat 4938.372 kb on - strandat 4938.398 kb on - strandat 4938.526 kb on + strand, within PfGW456L13_4425at 4938.526 kb on + strand, within PfGW456L13_4425at 4938.526 kb on + strand, within PfGW456L13_4425at 4938.526 kb on + strand, within PfGW456L13_4425at 4938.527 kb on - strand, within PfGW456L13_4425at 4938.527 kb on - strand, within PfGW456L13_4425at 4938.527 kb on - strand, within PfGW456L13_4425at 4938.574 kb on + strand, within PfGW456L13_4425at 4938.575 kb on - strand, within PfGW456L13_4425at 4938.614 kb on - strand, within PfGW456L13_4425at 4938.639 kb on + strand, within PfGW456L13_4425at 4938.640 kb on - strand, within PfGW456L13_4425at 4938.655 kb on + strand, within PfGW456L13_4425at 4938.670 kb on + strand, within PfGW456L13_4425at 4938.670 kb on + strand, within PfGW456L13_4425at 4938.697 kb on - strand, within PfGW456L13_4425at 4938.718 kb on + strandat 4938.718 kb on + strandat 4938.719 kb on - strandat 4938.719 kb on - strandat 4938.719 kb on - strandat 4938.839 kb on + strandat 4938.976 kb on + strand, within PfGW456L13_4426at 4938.976 kb on + strand, within PfGW456L13_4426at 4938.976 kb on + strand, within PfGW456L13_4426at 4938.976 kb on + strand, within PfGW456L13_4426at 4938.977 kb on - strand, within PfGW456L13_4426at 4938.991 kb on + strand, within PfGW456L13_4426at 4938.991 kb on + strand, within PfGW456L13_4426at 4938.992 kb on - strand, within PfGW456L13_4426at 4939.027 kb on + strand, within PfGW456L13_4426at 4939.098 kb on + strand, within PfGW456L13_4426at 4939.098 kb on + strand, within PfGW456L13_4426at 4939.098 kb on + strand, within PfGW456L13_4426at 4939.098 kb on + strand, within PfGW456L13_4426at 4939.099 kb on - strand, within PfGW456L13_4426at 4939.099 kb on - strand, within PfGW456L13_4426at 4939.099 kb on - strand, within PfGW456L13_4426at 4939.099 kb on - strand, within PfGW456L13_4426at 4939.099 kb on - strand, within PfGW456L13_4426

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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4,936,873 - PfGW456L13_4423 0.78 +0.6
4,936,966 + PfGW456L13_4423 0.83 +0.3
4,936,966 + PfGW456L13_4423 0.83 -0.0
4,936,998 + PfGW456L13_4423 0.84 +0.6
4,936,998 + PfGW456L13_4423 0.84 +0.0
4,936,998 + PfGW456L13_4423 0.84 -0.1
4,936,998 + PfGW456L13_4423 0.84 +0.4
4,936,998 + PfGW456L13_4423 0.84 +0.3
4,936,999 - PfGW456L13_4423 0.84 -1.5
4,937,108 - PfGW456L13_4423 0.89 +0.3
4,937,398 + -1.0
4,937,405 + -1.2
4,937,406 - +0.3
4,937,406 - -0.8
4,937,406 - +0.6
4,937,473 + -0.0
4,937,474 - -0.5
4,937,474 - -1.2
4,937,474 - +0.2
4,937,531 + +0.2
4,937,531 + -0.1
4,937,531 + -0.6
4,937,531 + -0.1
4,937,531 + -0.4
4,937,531 + -0.1
4,937,532 - -0.5
4,937,532 - -1.0
4,937,532 - -0.0
4,937,532 - -0.9
4,937,532 - -0.2
4,937,536 - -0.5
4,937,684 + +0.5
4,937,684 + -0.3
4,937,684 + +0.1
4,937,720 + -0.3
4,937,779 + +0.8
4,937,835 + PfGW456L13_4424 0.13 +0.1
4,937,836 - PfGW456L13_4424 0.13 +1.8
4,937,836 - PfGW456L13_4424 0.13 -1.5
4,937,836 - PfGW456L13_4424 0.13 -2.8
4,937,934 + PfGW456L13_4424 0.30 -1.1
4,937,935 - PfGW456L13_4424 0.30 +0.0
4,937,935 - PfGW456L13_4424 0.30 -0.4
4,938,109 + PfGW456L13_4424 0.59 -1.2
4,938,259 + PfGW456L13_4424 0.85 -0.1
4,938,259 + PfGW456L13_4424 0.85 +0.4
4,938,260 - PfGW456L13_4424 0.85 +0.6
4,938,260 - PfGW456L13_4424 0.85 -0.5
4,938,260 - PfGW456L13_4424 0.85 +0.8
4,938,288 + PfGW456L13_4424 0.90 -0.8
4,938,289 - +0.5
4,938,372 - -0.2
4,938,398 - +1.4
4,938,526 + PfGW456L13_4425 0.38 -0.2
4,938,526 + PfGW456L13_4425 0.38 -0.1
4,938,526 + PfGW456L13_4425 0.38 -0.3
4,938,526 + PfGW456L13_4425 0.38 +1.1
4,938,527 - PfGW456L13_4425 0.38 -0.1
4,938,527 - PfGW456L13_4425 0.38 +0.2
4,938,527 - PfGW456L13_4425 0.38 +1.6
4,938,574 + PfGW456L13_4425 0.51 -0.5
4,938,575 - PfGW456L13_4425 0.51 +0.3
4,938,614 - PfGW456L13_4425 0.62 +0.3
4,938,639 + PfGW456L13_4425 0.69 +0.9
4,938,640 - PfGW456L13_4425 0.69 +0.6
4,938,655 + PfGW456L13_4425 0.73 -0.2
4,938,670 + PfGW456L13_4425 0.77 +0.0
4,938,670 + PfGW456L13_4425 0.77 -0.8
4,938,697 - PfGW456L13_4425 0.84 -1.2
4,938,718 + -1.4
4,938,718 + +0.2
4,938,719 - -0.8
4,938,719 - -0.9
4,938,719 - +0.4
4,938,839 + -0.4
4,938,976 + PfGW456L13_4426 0.19 -1.0
4,938,976 + PfGW456L13_4426 0.19 +0.2
4,938,976 + PfGW456L13_4426 0.19 -1.2
4,938,976 + PfGW456L13_4426 0.19 -0.6
4,938,977 - PfGW456L13_4426 0.19 -0.5
4,938,991 + PfGW456L13_4426 0.24 +1.0
4,938,991 + PfGW456L13_4426 0.24 -0.6
4,938,992 - PfGW456L13_4426 0.24 -0.5
4,939,027 + PfGW456L13_4426 0.36 +0.7
4,939,098 + PfGW456L13_4426 0.61 -0.1
4,939,098 + PfGW456L13_4426 0.61 +0.7
4,939,098 + PfGW456L13_4426 0.61 +0.7
4,939,098 + PfGW456L13_4426 0.61 +0.0
4,939,099 - PfGW456L13_4426 0.62 -0.0
4,939,099 - PfGW456L13_4426 0.62 +0.8
4,939,099 - PfGW456L13_4426 0.62 -0.1
4,939,099 - PfGW456L13_4426 0.62 -0.2
4,939,099 - PfGW456L13_4426 0.62 +0.4

Or see this region's nucleotide sequence