Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3411

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3410 and PfGW456L13_3411 are separated by 39 nucleotidesPfGW456L13_3411 and PfGW456L13_3412 are separated by 1 nucleotides PfGW456L13_3410 - MFS permease, at 3,827,058 to 3,828,644 _3410 PfGW456L13_3411 - Fumarylacetoacetate hydrolase family protein, at 3,828,684 to 3,829,568 _3411 PfGW456L13_3412 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 3,829,570 to 3,830,520 _3412 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -2 -1 0 1at 3827.980 kb on - strand, within PfGW456L13_3410at 3827.998 kb on + strand, within PfGW456L13_3410at 3827.999 kb on - strand, within PfGW456L13_3410at 3827.999 kb on - strand, within PfGW456L13_3410at 3827.999 kb on - strand, within PfGW456L13_3410at 3828.143 kb on - strand, within PfGW456L13_3410at 3828.243 kb on + strand, within PfGW456L13_3410at 3828.243 kb on + strandat 3828.244 kb on - strand, within PfGW456L13_3410at 3828.244 kb on - strand, within PfGW456L13_3410at 3828.318 kb on + strand, within PfGW456L13_3410at 3828.346 kb on + strand, within PfGW456L13_3410at 3828.395 kb on + strand, within PfGW456L13_3410at 3828.398 kb on + strand, within PfGW456L13_3410at 3828.399 kb on - strand, within PfGW456L13_3410at 3828.399 kb on - strand, within PfGW456L13_3410at 3828.399 kb on - strand, within PfGW456L13_3410at 3828.608 kb on + strandat 3828.608 kb on + strandat 3828.608 kb on + strandat 3828.609 kb on - strandat 3828.662 kb on + strandat 3828.665 kb on - strandat 3828.685 kb on + strandat 3828.685 kb on + strandat 3828.685 kb on + strandat 3828.686 kb on - strandat 3828.884 kb on + strand, within PfGW456L13_3411at 3828.884 kb on + strand, within PfGW456L13_3411at 3828.885 kb on - strand, within PfGW456L13_3411at 3828.885 kb on - strand, within PfGW456L13_3411at 3828.898 kb on + strand, within PfGW456L13_3411at 3828.898 kb on + strand, within PfGW456L13_3411at 3829.285 kb on + strand, within PfGW456L13_3411at 3829.285 kb on + strand, within PfGW456L13_3411at 3829.286 kb on - strand, within PfGW456L13_3411at 3829.286 kb on - strand, within PfGW456L13_3411at 3829.339 kb on + strand, within PfGW456L13_3411at 3829.497 kb on - strandat 3829.586 kb on + strandat 3829.587 kb on - strandat 3829.701 kb on - strand, within PfGW456L13_3412at 3829.770 kb on - strand, within PfGW456L13_3412at 3829.848 kb on - strand, within PfGW456L13_3412at 3829.848 kb on - strand, within PfGW456L13_3412at 3829.848 kb on - strand, within PfGW456L13_3412at 3829.925 kb on + strand, within PfGW456L13_3412at 3830.003 kb on + strand, within PfGW456L13_3412at 3830.055 kb on - strand, within PfGW456L13_3412at 3830.327 kb on + strand, within PfGW456L13_3412at 3830.327 kb on + strand, within PfGW456L13_3412at 3830.327 kb on + strand, within PfGW456L13_3412at 3830.328 kb on - strand, within PfGW456L13_3412at 3830.328 kb on - strand, within PfGW456L13_3412at 3830.393 kb on + strand, within PfGW456L13_3412at 3830.456 kb on + strandat 3830.498 kb on + strandat 3830.498 kb on + strandat 3830.498 kb on + strandat 3830.498 kb on + strandat 3830.523 kb on + strandat 3830.524 kb on - strandat 3830.536 kb on - strandat 3830.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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3,827,980 - PfGW456L13_3410 0.58 -0.8
3,827,998 + PfGW456L13_3410 0.59 +0.4
3,827,999 - PfGW456L13_3410 0.59 -0.1
3,827,999 - PfGW456L13_3410 0.59 -0.6
3,827,999 - PfGW456L13_3410 0.59 +0.1
3,828,143 - PfGW456L13_3410 0.68 +0.1
3,828,243 + PfGW456L13_3410 0.75 -0.3
3,828,243 + -0.2
3,828,244 - PfGW456L13_3410 0.75 -1.9
3,828,244 - PfGW456L13_3410 0.75 -0.3
3,828,318 + PfGW456L13_3410 0.79 +0.0
3,828,346 + PfGW456L13_3410 0.81 -0.3
3,828,395 + PfGW456L13_3410 0.84 +0.5
3,828,398 + PfGW456L13_3410 0.84 +0.3
3,828,399 - PfGW456L13_3410 0.84 +0.0
3,828,399 - PfGW456L13_3410 0.84 +0.7
3,828,399 - PfGW456L13_3410 0.84 +0.4
3,828,608 + -1.5
3,828,608 + +1.1
3,828,608 + -0.5
3,828,609 - -0.0
3,828,662 + -1.4
3,828,665 - -1.3
3,828,685 + -0.2
3,828,685 + +0.0
3,828,685 + -1.0
3,828,686 - +0.7
3,828,884 + PfGW456L13_3411 0.23 +0.5
3,828,884 + PfGW456L13_3411 0.23 -0.4
3,828,885 - PfGW456L13_3411 0.23 +0.1
3,828,885 - PfGW456L13_3411 0.23 -0.6
3,828,898 + PfGW456L13_3411 0.24 -1.0
3,828,898 + PfGW456L13_3411 0.24 +0.5
3,829,285 + PfGW456L13_3411 0.68 -0.5
3,829,285 + PfGW456L13_3411 0.68 -2.5
3,829,286 - PfGW456L13_3411 0.68 +0.1
3,829,286 - PfGW456L13_3411 0.68 -0.6
3,829,339 + PfGW456L13_3411 0.74 -0.6
3,829,497 - +0.1
3,829,586 + -1.4
3,829,587 - +0.6
3,829,701 - PfGW456L13_3412 0.14 -0.9
3,829,770 - PfGW456L13_3412 0.21 -0.2
3,829,848 - PfGW456L13_3412 0.29 +1.4
3,829,848 - PfGW456L13_3412 0.29 -0.6
3,829,848 - PfGW456L13_3412 0.29 -0.6
3,829,925 + PfGW456L13_3412 0.37 +0.2
3,830,003 + PfGW456L13_3412 0.46 +0.2
3,830,055 - PfGW456L13_3412 0.51 +0.0
3,830,327 + PfGW456L13_3412 0.80 +0.2
3,830,327 + PfGW456L13_3412 0.80 -1.3
3,830,327 + PfGW456L13_3412 0.80 +0.6
3,830,328 - PfGW456L13_3412 0.80 +0.3
3,830,328 - PfGW456L13_3412 0.80 -0.2
3,830,393 + PfGW456L13_3412 0.87 +0.4
3,830,456 + +0.3
3,830,498 + -0.2
3,830,498 + +1.0
3,830,498 + -0.2
3,830,498 + +0.7
3,830,523 + +0.0
3,830,524 - -0.8
3,830,536 - -0.4
3,830,536 - +0.3

Or see this region's nucleotide sequence