Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2976

Experiment: Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2974 and PfGW456L13_2975 are separated by 157 nucleotidesPfGW456L13_2975 and PfGW456L13_2976 are separated by 164 nucleotidesPfGW456L13_2976 and PfGW456L13_2977 are separated by 9 nucleotides PfGW456L13_2974 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 3,319,299 to 3,320,339 _2974 PfGW456L13_2975 - Probable transmembrane protein, at 3,320,497 to 3,320,814 _2975 PfGW456L13_2976 - hypothetical protein, at 3,320,979 to 3,321,233 _2976 PfGW456L13_2977 - Transcriptional regulator in custer with plant-induced nitrilase, at 3,321,243 to 3,322,142 _2977 Position (kb) 3320 3321 3322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3320.406 kb on + strandat 3320.406 kb on + strandat 3320.406 kb on + strandat 3320.406 kb on + strandat 3320.406 kb on + strandat 3320.406 kb on + strandat 3320.407 kb on - strandat 3320.407 kb on - strandat 3320.407 kb on - strandat 3320.407 kb on - strandat 3320.407 kb on - strandat 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.579 kb on + strand, within PfGW456L13_2975at 3320.580 kb on - strand, within PfGW456L13_2975at 3320.580 kb on - strandat 3320.580 kb on - strand, within PfGW456L13_2975at 3320.580 kb on - strand, within PfGW456L13_2975at 3320.820 kb on + strandat 3320.820 kb on + strandat 3320.820 kb on + strandat 3320.821 kb on - strandat 3320.833 kb on + strandat 3320.833 kb on + strandat 3320.882 kb on + strandat 3320.882 kb on + strandat 3320.882 kb on + strandat 3320.882 kb on + strandat 3320.883 kb on - strandat 3320.883 kb on - strandat 3320.936 kb on + strandat 3320.936 kb on + strandat 3320.936 kb on + strandat 3320.936 kb on + strandat 3320.937 kb on - strandat 3320.937 kb on - strandat 3320.937 kb on - strandat 3320.937 kb on - strandat 3320.937 kb on - strandat 3320.937 kb on - strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.943 kb on + strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.944 kb on - strandat 3320.960 kb on + strandat 3320.961 kb on - strandat 3321.180 kb on + strand, within PfGW456L13_2976at 3321.181 kb on - strand, within PfGW456L13_2976at 3321.181 kb on - strand, within PfGW456L13_2976at 3321.181 kb on - strand, within PfGW456L13_2976at 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.231 kb on + strandat 3321.232 kb on - strandat 3321.232 kb on - strandat 3321.232 kb on - strandat 3321.232 kb on - strandat 3321.232 kb on - strandat 3321.232 kb on - strandat 3321.436 kb on - strand, within PfGW456L13_2977at 3321.436 kb on - strand, within PfGW456L13_2977at 3321.436 kb on - strand, within PfGW456L13_2977at 3321.436 kb on - strand, within PfGW456L13_2977at 3321.528 kb on - strand, within PfGW456L13_2977at 3321.631 kb on + strand, within PfGW456L13_2977at 3321.631 kb on + strand, within PfGW456L13_2977at 3321.631 kb on + strand, within PfGW456L13_2977at 3321.632 kb on - strand, within PfGW456L13_2977at 3321.632 kb on - strand, within PfGW456L13_2977at 3321.632 kb on - strand, within PfGW456L13_2977at 3321.704 kb on + strand, within PfGW456L13_2977at 3321.811 kb on + strand, within PfGW456L13_2977at 3321.862 kb on + strand, within PfGW456L13_2977at 3321.863 kb on - strand, within PfGW456L13_2977at 3321.863 kb on - strand, within PfGW456L13_2977at 3321.863 kb on - strand, within PfGW456L13_2977at 3322.000 kb on + strand, within PfGW456L13_2977at 3322.001 kb on - strand, within PfGW456L13_2977at 3322.152 kb on - strandat 3322.177 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
remove
3,320,406 + -0.9
3,320,406 + +0.3
3,320,406 + -0.7
3,320,406 + +0.3
3,320,406 + -1.8
3,320,406 + +0.1
3,320,407 - +0.3
3,320,407 - -0.3
3,320,407 - +0.8
3,320,407 - +2.0
3,320,407 - -1.8
3,320,579 + PfGW456L13_2975 0.26 +0.7
3,320,579 + PfGW456L13_2975 0.26 -0.5
3,320,579 + PfGW456L13_2975 0.26 -0.8
3,320,579 + PfGW456L13_2975 0.26 -0.4
3,320,579 + PfGW456L13_2975 0.26 -0.6
3,320,579 + PfGW456L13_2975 0.26 +0.3
3,320,579 + PfGW456L13_2975 0.26 -0.9
3,320,579 + PfGW456L13_2975 0.26 -2.7
3,320,580 - PfGW456L13_2975 0.26 -0.1
3,320,580 - -0.4
3,320,580 - PfGW456L13_2975 0.26 -0.6
3,320,580 - PfGW456L13_2975 0.26 -0.4
3,320,820 + +0.4
3,320,820 + -1.1
3,320,820 + +0.6
3,320,821 - -0.7
3,320,833 + +0.0
3,320,833 + +0.4
3,320,882 + -1.6
3,320,882 + +0.2
3,320,882 + -0.4
3,320,882 + -0.4
3,320,883 - -0.1
3,320,883 - -1.5
3,320,936 + +0.0
3,320,936 + +0.6
3,320,936 + -0.8
3,320,936 + +0.6
3,320,937 - -0.3
3,320,937 - +0.1
3,320,937 - +0.0
3,320,937 - +0.1
3,320,937 - +0.1
3,320,937 - -0.2
3,320,943 + -0.9
3,320,943 + +0.7
3,320,943 + +0.3
3,320,943 + +0.3
3,320,943 + -0.4
3,320,943 + -0.6
3,320,943 + +0.2
3,320,943 + -0.1
3,320,944 - -0.9
3,320,944 - -0.4
3,320,944 - -0.0
3,320,944 - -0.0
3,320,944 - +0.6
3,320,944 - -0.9
3,320,944 - +0.8
3,320,944 - -1.0
3,320,944 - +0.9
3,320,944 - -0.1
3,320,944 - -0.7
3,320,944 - -0.2
3,320,944 - -0.3
3,320,960 + +0.3
3,320,961 - -0.9
3,321,180 + PfGW456L13_2976 0.79 -1.4
3,321,181 - PfGW456L13_2976 0.79 -0.5
3,321,181 - PfGW456L13_2976 0.79 -0.0
3,321,181 - PfGW456L13_2976 0.79 +1.2
3,321,231 + +0.2
3,321,231 + +0.3
3,321,231 + -0.1
3,321,231 + -0.5
3,321,231 + +0.7
3,321,231 + +0.5
3,321,231 + -0.2
3,321,231 + +1.1
3,321,231 + -0.5
3,321,232 - +0.1
3,321,232 - +1.4
3,321,232 - -0.8
3,321,232 - -0.1
3,321,232 - -0.2
3,321,232 - +0.3
3,321,436 - PfGW456L13_2977 0.21 -0.1
3,321,436 - PfGW456L13_2977 0.21 -2.9
3,321,436 - PfGW456L13_2977 0.21 -0.0
3,321,436 - PfGW456L13_2977 0.21 -0.7
3,321,528 - PfGW456L13_2977 0.32 +0.6
3,321,631 + PfGW456L13_2977 0.43 -0.5
3,321,631 + PfGW456L13_2977 0.43 +0.9
3,321,631 + PfGW456L13_2977 0.43 +0.0
3,321,632 - PfGW456L13_2977 0.43 +0.1
3,321,632 - PfGW456L13_2977 0.43 -1.2
3,321,632 - PfGW456L13_2977 0.43 -0.2
3,321,704 + PfGW456L13_2977 0.51 +0.3
3,321,811 + PfGW456L13_2977 0.63 -0.7
3,321,862 + PfGW456L13_2977 0.69 -0.9
3,321,863 - PfGW456L13_2977 0.69 -1.0
3,321,863 - PfGW456L13_2977 0.69 +0.1
3,321,863 - PfGW456L13_2977 0.69 -0.9
3,322,000 + PfGW456L13_2977 0.84 -0.2
3,322,001 - PfGW456L13_2977 0.84 +0.1
3,322,152 - -0.3
3,322,177 - +0.6

Or see this region's nucleotide sequence