Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_295

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_294 and PfGW456L13_295 are separated by 59 nucleotidesPfGW456L13_295 and PfGW456L13_296 are separated by 192 nucleotides PfGW456L13_294 - Polyhydroxyalkanoic acid synthase, at 345,897 to 347,579 _294 PfGW456L13_295 - Transcriptional regulator PhaD, at 347,639 to 348,259 _295 PfGW456L13_296 - Polyhydroxyalkanoate granule-associated protein PhaF, at 348,452 to 349,288 _296 Position (kb) 347 348 349Strain fitness (log2 ratio) -1 0 1at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.717 kb on + strand, within PfGW456L13_294at 346.718 kb on - strand, within PfGW456L13_294at 346.863 kb on + strand, within PfGW456L13_294at 346.863 kb on + strand, within PfGW456L13_294at 346.864 kb on - strand, within PfGW456L13_294at 346.954 kb on - strand, within PfGW456L13_294at 346.954 kb on - strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.967 kb on - strand, within PfGW456L13_294at 346.967 kb on - strand, within PfGW456L13_294at 347.031 kb on + strand, within PfGW456L13_294at 347.032 kb on - strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.278 kb on - strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.421 kb on + strandat 347.422 kb on - strandat 347.422 kb on - strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.533 kb on - strandat 347.558 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.627 kb on + strandat 347.628 kb on - strandat 347.628 kb on - strandat 347.756 kb on + strand, within PfGW456L13_295at 347.757 kb on - strand, within PfGW456L13_295at 347.759 kb on + strand, within PfGW456L13_295at 347.760 kb on - strand, within PfGW456L13_295at 347.760 kb on - strand, within PfGW456L13_295at 348.119 kb on + strand, within PfGW456L13_295at 348.165 kb on - strand, within PfGW456L13_295at 348.165 kb on - strand, within PfGW456L13_295at 348.240 kb on - strandat 348.794 kb on - strand, within PfGW456L13_296at 349.191 kb on + strandat 349.192 kb on - strand, within PfGW456L13_296at 349.200 kb on - strand, within PfGW456L13_296

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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346,705 - PfGW456L13_294 0.48 -0.5
346,705 - PfGW456L13_294 0.48 +0.4
346,705 - PfGW456L13_294 0.48 +0.1
346,717 + PfGW456L13_294 0.49 -0.2
346,718 - PfGW456L13_294 0.49 +0.7
346,863 + PfGW456L13_294 0.57 +0.7
346,863 + PfGW456L13_294 0.57 -0.6
346,864 - PfGW456L13_294 0.57 +0.5
346,954 - PfGW456L13_294 0.63 +0.7
346,954 - PfGW456L13_294 0.63 -1.5
346,966 + PfGW456L13_294 0.64 +0.2
346,966 + PfGW456L13_294 0.64 +1.2
346,966 + PfGW456L13_294 0.64 -0.3
346,966 + PfGW456L13_294 0.64 +0.5
346,966 + PfGW456L13_294 0.64 -0.9
346,967 - PfGW456L13_294 0.64 +0.3
346,967 - PfGW456L13_294 0.64 +0.6
347,031 + PfGW456L13_294 0.67 -0.1
347,032 - PfGW456L13_294 0.67 +0.3
347,046 + PfGW456L13_294 0.68 +0.2
347,046 + PfGW456L13_294 0.68 -0.1
347,046 + PfGW456L13_294 0.68 +0.7
347,046 + PfGW456L13_294 0.68 -1.0
347,047 - PfGW456L13_294 0.68 -0.6
347,047 - PfGW456L13_294 0.68 -1.1
347,047 - PfGW456L13_294 0.68 -0.5
347,278 - PfGW456L13_294 0.82 -0.2
347,379 + PfGW456L13_294 0.88 -0.4
347,379 + PfGW456L13_294 0.88 -0.2
347,379 + PfGW456L13_294 0.88 -0.8
347,379 + PfGW456L13_294 0.88 +0.3
347,380 - PfGW456L13_294 0.88 -0.1
347,380 - PfGW456L13_294 0.88 +0.0
347,380 - PfGW456L13_294 0.88 -0.2
347,380 - PfGW456L13_294 0.88 -0.3
347,380 - PfGW456L13_294 0.88 +0.5
347,380 - PfGW456L13_294 0.88 -0.7
347,380 - PfGW456L13_294 0.88 +0.5
347,380 - PfGW456L13_294 0.88 -0.0
347,421 + -0.1
347,422 - +0.5
347,422 - +1.2
347,424 + -0.0
347,424 + -0.0
347,424 + -0.6
347,424 + -0.2
347,424 + +0.1
347,425 - +0.4
347,425 - -1.0
347,425 - +0.2
347,425 - +0.3
347,533 - -0.1
347,558 + +0.6
347,562 + +0.3
347,562 + +0.0
347,562 + +0.3
347,562 + -0.2
347,562 + +0.6
347,562 + +0.0
347,562 + -0.2
347,562 + +0.4
347,562 + +0.3
347,563 - +0.2
347,563 - +0.4
347,563 - -0.9
347,563 - +0.6
347,563 - -0.4
347,563 - -0.0
347,563 - -0.2
347,563 - -1.1
347,563 - +0.2
347,563 - -0.8
347,563 - +0.7
347,627 + -0.1
347,628 - -0.4
347,628 - -0.5
347,756 + PfGW456L13_295 0.19 -1.0
347,757 - PfGW456L13_295 0.19 -1.3
347,759 + PfGW456L13_295 0.19 +0.9
347,760 - PfGW456L13_295 0.19 -0.4
347,760 - PfGW456L13_295 0.19 -0.4
348,119 + PfGW456L13_295 0.77 -0.0
348,165 - PfGW456L13_295 0.85 -1.2
348,165 - PfGW456L13_295 0.85 -0.9
348,240 - -0.8
348,794 - PfGW456L13_296 0.41 -0.5
349,191 + +1.2
349,192 - PfGW456L13_296 0.88 -1.3
349,200 - PfGW456L13_296 0.89 -0.1

Or see this region's nucleotide sequence