Experiment: Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2579 and PfGW456L13_2580 are separated by 48 nucleotides PfGW456L13_2580 and PfGW456L13_2581 are separated by 107 nucleotides PfGW456L13_2581 and PfGW456L13_2582 overlap by 4 nucleotides PfGW456L13_2582 and PfGW456L13_2583 are separated by 158 nucleotides
PfGW456L13_2579 - AFG1-like ATPase, at 2,866,871 to 2,867,809
_2579
PfGW456L13_2580 - hypothetical protein, at 2,867,858 to 2,868,052
_2580
PfGW456L13_2581 - Transmembrane regulator protein PrtR, at 2,868,160 to 2,868,912
_2581
PfGW456L13_2582 - RNA polymerase sigma-54 factor RpoN, at 2,868,909 to 2,869,415
_2582
PfGW456L13_2583 - Catalase (EC 1.11.1.6), at 2,869,574 to 2,870,659
_2583
Position (kb)
2868
2869 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2867.203 kb on + strand, within PfGW456L13_2579 at 2867.207 kb on + strand, within PfGW456L13_2579 at 2867.286 kb on + strand, within PfGW456L13_2579 at 2867.286 kb on + strand, within PfGW456L13_2579 at 2867.377 kb on + strand, within PfGW456L13_2579 at 2867.415 kb on + strand, within PfGW456L13_2579 at 2867.751 kb on + strand at 2867.847 kb on + strand at 2867.848 kb on - strand at 2867.877 kb on + strand at 2867.877 kb on + strand at 2868.002 kb on - strand, within PfGW456L13_2580 at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.045 kb on + strand at 2868.201 kb on + strand at 2868.202 kb on - strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.224 kb on + strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.225 kb on - strand at 2868.230 kb on + strand at 2868.231 kb on - strand at 2868.231 kb on - strand at 2868.249 kb on - strand, within PfGW456L13_2581 at 2868.323 kb on + strand, within PfGW456L13_2581 at 2868.357 kb on - strand, within PfGW456L13_2581 at 2868.697 kb on + strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.698 kb on - strand, within PfGW456L13_2581 at 2868.872 kb on + strand at 2868.872 kb on + strand at 2868.873 kb on - strand at 2868.873 kb on - strand at 2869.011 kb on + strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.012 kb on - strand, within PfGW456L13_2582 at 2869.039 kb on + strand, within PfGW456L13_2582 at 2869.241 kb on - strand, within PfGW456L13_2582 at 2869.428 kb on - strand at 2869.435 kb on - strand at 2869.446 kb on + strand at 2869.446 kb on + strand at 2869.447 kb on - strand at 2869.447 kb on - strand at 2869.471 kb on + strand at 2869.490 kb on + strand at 2869.509 kb on + strand at 2869.578 kb on + strand at 2869.578 kb on + strand at 2869.578 kb on + strand at 2869.578 kb on + strand at 2869.578 kb on + strand at 2869.579 kb on - strand at 2869.579 kb on - strand at 2869.685 kb on + strand, within PfGW456L13_2583 at 2869.841 kb on + strand, within PfGW456L13_2583 at 2869.841 kb on + strand, within PfGW456L13_2583 at 2869.841 kb on + strand, within PfGW456L13_2583
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml remove 2,867,203 + PfGW456L13_2579 0.35 +1.1 2,867,207 + PfGW456L13_2579 0.36 +0.1 2,867,286 + PfGW456L13_2579 0.44 -0.1 2,867,286 + PfGW456L13_2579 0.44 -0.2 2,867,377 + PfGW456L13_2579 0.54 +0.5 2,867,415 + PfGW456L13_2579 0.58 +0.4 2,867,751 + +0.1 2,867,847 + +0.5 2,867,848 - +0.4 2,867,877 + +0.8 2,867,877 + +0.7 2,868,002 - PfGW456L13_2580 0.74 -0.1 2,868,045 + +1.7 2,868,045 + +0.5 2,868,045 + +3.1 2,868,045 + -0.0 2,868,201 + -0.8 2,868,202 - -0.3 2,868,224 + -0.4 2,868,224 + +0.4 2,868,224 + -0.4 2,868,224 + +0.0 2,868,224 + -0.9 2,868,224 + +1.7 2,868,224 + +0.1 2,868,224 + +0.0 2,868,224 + +0.6 2,868,224 + -0.8 2,868,224 + +0.5 2,868,225 - +0.4 2,868,225 - +0.2 2,868,225 - -1.1 2,868,225 - -0.2 2,868,225 - -0.9 2,868,230 + +0.3 2,868,231 - -1.9 2,868,231 - +0.5 2,868,249 - PfGW456L13_2581 0.12 +0.2 2,868,323 + PfGW456L13_2581 0.22 -1.6 2,868,357 - PfGW456L13_2581 0.26 -1.3 2,868,697 + PfGW456L13_2581 0.71 -1.9 2,868,698 - PfGW456L13_2581 0.71 -1.0 2,868,698 - PfGW456L13_2581 0.71 -1.2 2,868,698 - PfGW456L13_2581 0.71 +1.7 2,868,872 + -1.6 2,868,872 + +3.0 2,868,873 - -1.1 2,868,873 - -0.5 2,869,011 + PfGW456L13_2582 0.20 +0.8 2,869,012 - PfGW456L13_2582 0.20 +0.8 2,869,012 - PfGW456L13_2582 0.20 -0.9 2,869,012 - PfGW456L13_2582 0.20 -0.2 2,869,039 + PfGW456L13_2582 0.26 -1.3 2,869,241 - PfGW456L13_2582 0.65 +0.8 2,869,428 - -0.6 2,869,435 - +0.2 2,869,446 + +0.7 2,869,446 + +0.5 2,869,447 - -0.3 2,869,447 - +0.4 2,869,471 + +1.7 2,869,490 + -0.0 2,869,509 + -0.2 2,869,578 + -0.1 2,869,578 + -0.9 2,869,578 + -0.4 2,869,578 + -0.0 2,869,578 + -0.5 2,869,579 - +0.1 2,869,579 - -0.1 2,869,685 + PfGW456L13_2583 0.10 +0.4 2,869,841 + PfGW456L13_2583 0.25 +0.7 2,869,841 + PfGW456L13_2583 0.25 -0.3 2,869,841 + PfGW456L13_2583 0.25 -0.4
Or see this region's nucleotide sequence