Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2581

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2579 and PfGW456L13_2580 are separated by 48 nucleotidesPfGW456L13_2580 and PfGW456L13_2581 are separated by 107 nucleotidesPfGW456L13_2581 and PfGW456L13_2582 overlap by 4 nucleotidesPfGW456L13_2582 and PfGW456L13_2583 are separated by 158 nucleotides PfGW456L13_2579 - AFG1-like ATPase, at 2,866,871 to 2,867,809 _2579 PfGW456L13_2580 - hypothetical protein, at 2,867,858 to 2,868,052 _2580 PfGW456L13_2581 - Transmembrane regulator protein PrtR, at 2,868,160 to 2,868,912 _2581 PfGW456L13_2582 - RNA polymerase sigma-54 factor RpoN, at 2,868,909 to 2,869,415 _2582 PfGW456L13_2583 - Catalase (EC 1.11.1.6), at 2,869,574 to 2,870,659 _2583 Position (kb) 2868 2869Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2867.203 kb on + strand, within PfGW456L13_2579at 2867.207 kb on + strand, within PfGW456L13_2579at 2867.286 kb on + strand, within PfGW456L13_2579at 2867.286 kb on + strand, within PfGW456L13_2579at 2867.377 kb on + strand, within PfGW456L13_2579at 2867.415 kb on + strand, within PfGW456L13_2579at 2867.751 kb on + strandat 2867.847 kb on + strandat 2867.848 kb on - strandat 2867.877 kb on + strandat 2867.877 kb on + strandat 2868.002 kb on - strand, within PfGW456L13_2580at 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.201 kb on + strandat 2868.202 kb on - strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.230 kb on + strandat 2868.231 kb on - strandat 2868.231 kb on - strandat 2868.249 kb on - strand, within PfGW456L13_2581at 2868.323 kb on + strand, within PfGW456L13_2581at 2868.357 kb on - strand, within PfGW456L13_2581at 2868.697 kb on + strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581at 2868.872 kb on + strandat 2868.872 kb on + strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2869.011 kb on + strand, within PfGW456L13_2582at 2869.012 kb on - strand, within PfGW456L13_2582at 2869.012 kb on - strand, within PfGW456L13_2582at 2869.012 kb on - strand, within PfGW456L13_2582at 2869.039 kb on + strand, within PfGW456L13_2582at 2869.241 kb on - strand, within PfGW456L13_2582at 2869.428 kb on - strandat 2869.435 kb on - strandat 2869.446 kb on + strandat 2869.446 kb on + strandat 2869.447 kb on - strandat 2869.447 kb on - strandat 2869.471 kb on + strandat 2869.490 kb on + strandat 2869.509 kb on + strandat 2869.578 kb on + strandat 2869.578 kb on + strandat 2869.578 kb on + strandat 2869.578 kb on + strandat 2869.578 kb on + strandat 2869.579 kb on - strandat 2869.579 kb on - strandat 2869.685 kb on + strand, within PfGW456L13_2583at 2869.841 kb on + strand, within PfGW456L13_2583at 2869.841 kb on + strand, within PfGW456L13_2583at 2869.841 kb on + strand, within PfGW456L13_2583

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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2,867,203 + PfGW456L13_2579 0.35 +1.1
2,867,207 + PfGW456L13_2579 0.36 +0.1
2,867,286 + PfGW456L13_2579 0.44 -0.1
2,867,286 + PfGW456L13_2579 0.44 -0.2
2,867,377 + PfGW456L13_2579 0.54 +0.5
2,867,415 + PfGW456L13_2579 0.58 +0.4
2,867,751 + +0.1
2,867,847 + +0.5
2,867,848 - +0.4
2,867,877 + +0.8
2,867,877 + +0.7
2,868,002 - PfGW456L13_2580 0.74 -0.1
2,868,045 + +1.7
2,868,045 + +0.5
2,868,045 + +3.1
2,868,045 + -0.0
2,868,201 + -0.8
2,868,202 - -0.3
2,868,224 + -0.4
2,868,224 + +0.4
2,868,224 + -0.4
2,868,224 + +0.0
2,868,224 + -0.9
2,868,224 + +1.7
2,868,224 + +0.1
2,868,224 + +0.0
2,868,224 + +0.6
2,868,224 + -0.8
2,868,224 + +0.5
2,868,225 - +0.4
2,868,225 - +0.2
2,868,225 - -1.1
2,868,225 - -0.2
2,868,225 - -0.9
2,868,230 + +0.3
2,868,231 - -1.9
2,868,231 - +0.5
2,868,249 - PfGW456L13_2581 0.12 +0.2
2,868,323 + PfGW456L13_2581 0.22 -1.6
2,868,357 - PfGW456L13_2581 0.26 -1.3
2,868,697 + PfGW456L13_2581 0.71 -1.9
2,868,698 - PfGW456L13_2581 0.71 -1.0
2,868,698 - PfGW456L13_2581 0.71 -1.2
2,868,698 - PfGW456L13_2581 0.71 +1.7
2,868,872 + -1.6
2,868,872 + +3.0
2,868,873 - -1.1
2,868,873 - -0.5
2,869,011 + PfGW456L13_2582 0.20 +0.8
2,869,012 - PfGW456L13_2582 0.20 +0.8
2,869,012 - PfGW456L13_2582 0.20 -0.9
2,869,012 - PfGW456L13_2582 0.20 -0.2
2,869,039 + PfGW456L13_2582 0.26 -1.3
2,869,241 - PfGW456L13_2582 0.65 +0.8
2,869,428 - -0.6
2,869,435 - +0.2
2,869,446 + +0.7
2,869,446 + +0.5
2,869,447 - -0.3
2,869,447 - +0.4
2,869,471 + +1.7
2,869,490 + -0.0
2,869,509 + -0.2
2,869,578 + -0.1
2,869,578 + -0.9
2,869,578 + -0.4
2,869,578 + -0.0
2,869,578 + -0.5
2,869,579 - +0.1
2,869,579 - -0.1
2,869,685 + PfGW456L13_2583 0.10 +0.4
2,869,841 + PfGW456L13_2583 0.25 +0.7
2,869,841 + PfGW456L13_2583 0.25 -0.3
2,869,841 + PfGW456L13_2583 0.25 -0.4

Or see this region's nucleotide sequence