Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2427

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2425 and PfGW456L13_2426 are separated by 8 nucleotidesPfGW456L13_2426 and PfGW456L13_2427 are separated by 28 nucleotides PfGW456L13_2425 - Phenylacetate-CoA oxygenase, PaaI subunit, at 2,689,684 to 2,690,445 _2425 PfGW456L13_2426 - Phenylacetate-CoA oxygenase, PaaH subunit, at 2,690,454 to 2,690,735 _2426 PfGW456L13_2427 - Phenylacetate-CoA oxygenase, PaaG subunit, at 2,690,764 to 2,691,753 _2427 Position (kb) 2690 2691 2692Strain fitness (log2 ratio) -2 -1 0 1at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.788 kb on - strand, within PfGW456L13_2425at 2689.788 kb on - strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.136 kb on - strand, within PfGW456L13_2425at 2690.417 kb on + strandat 2690.418 kb on - strandat 2690.439 kb on + strandat 2690.440 kb on - strandat 2690.504 kb on - strand, within PfGW456L13_2426at 2690.614 kb on + strand, within PfGW456L13_2426at 2690.615 kb on - strand, within PfGW456L13_2426at 2690.615 kb on - strand, within PfGW456L13_2426at 2690.901 kb on - strand, within PfGW456L13_2427at 2691.266 kb on + strand, within PfGW456L13_2427at 2691.386 kb on + strand, within PfGW456L13_2427at 2691.386 kb on + strand, within PfGW456L13_2427at 2691.387 kb on - strand, within PfGW456L13_2427at 2691.387 kb on - strand, within PfGW456L13_2427at 2691.458 kb on + strand, within PfGW456L13_2427at 2691.458 kb on + strand, within PfGW456L13_2427at 2691.459 kb on - strand, within PfGW456L13_2427at 2691.459 kb on - strand, within PfGW456L13_2427at 2691.459 kb on - strand, within PfGW456L13_2427at 2691.464 kb on + strand, within PfGW456L13_2427at 2691.464 kb on + strand, within PfGW456L13_2427at 2691.465 kb on - strand, within PfGW456L13_2427at 2691.715 kb on + strandat 2691.715 kb on + strandat 2691.716 kb on - strandat 2691.736 kb on + strandat 2691.736 kb on + strandat 2691.800 kb on + strandat 2691.816 kb on + strandat 2691.843 kb on + strandat 2691.843 kb on + strandat 2691.891 kb on + strandat 2691.891 kb on + strandat 2691.891 kb on + strandat 2691.892 kb on - strandat 2691.892 kb on - strandat 2691.892 kb on - strandat 2691.892 kb on - strandat 2691.892 kb on - strandat 2691.892 kb on - strandat 2691.895 kb on + strandat 2691.896 kb on - strandat 2691.896 kb on - strandat 2691.896 kb on - strandat 2691.896 kb on - strandat 2691.896 kb on - strandat 2692.083 kb on - strandat 2692.083 kb on - strandat 2692.083 kb on - strandat 2692.083 kb on - strandat 2692.391 kb on + strandat 2692.406 kb on + strandat 2692.407 kb on - strandat 2692.407 kb on - strandat 2692.462 kb on + strandat 2692.462 kb on + strandat 2692.504 kb on + strandat 2692.504 kb on + strandat 2692.504 kb on + strandat 2692.505 kb on - strandat 2692.505 kb on - strandat 2692.519 kb on + strandat 2692.519 kb on + strandat 2692.519 kb on + strandat 2692.520 kb on - strandat 2692.520 kb on - strandat 2692.688 kb on - strandat 2692.688 kb on - strandat 2692.688 kb on - strandat 2692.716 kb on + strandat 2692.730 kb on + strandat 2692.730 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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2,689,787 + PfGW456L13_2425 0.14 +0.2
2,689,787 + PfGW456L13_2425 0.14 +0.2
2,689,787 + PfGW456L13_2425 0.14 -1.1
2,689,787 + PfGW456L13_2425 0.14 +1.1
2,689,788 - PfGW456L13_2425 0.14 -0.4
2,689,788 - PfGW456L13_2425 0.14 -0.2
2,690,039 + PfGW456L13_2425 0.47 -0.5
2,690,039 + PfGW456L13_2425 0.47 +0.3
2,690,039 + PfGW456L13_2425 0.47 +0.1
2,690,039 + PfGW456L13_2425 0.47 -2.3
2,690,039 + PfGW456L13_2425 0.47 -0.8
2,690,039 + PfGW456L13_2425 0.47 +0.1
2,690,040 - PfGW456L13_2425 0.47 +0.4
2,690,040 - PfGW456L13_2425 0.47 +0.8
2,690,040 - PfGW456L13_2425 0.47 +0.7
2,690,040 - PfGW456L13_2425 0.47 +0.3
2,690,040 - PfGW456L13_2425 0.47 -1.6
2,690,040 - PfGW456L13_2425 0.47 -0.4
2,690,136 - PfGW456L13_2425 0.59 -0.3
2,690,417 + -0.2
2,690,418 - -1.0
2,690,439 + -0.2
2,690,440 - +0.2
2,690,504 - PfGW456L13_2426 0.18 +0.2
2,690,614 + PfGW456L13_2426 0.57 +0.3
2,690,615 - PfGW456L13_2426 0.57 +0.2
2,690,615 - PfGW456L13_2426 0.57 +0.4
2,690,901 - PfGW456L13_2427 0.14 -1.3
2,691,266 + PfGW456L13_2427 0.51 -1.4
2,691,386 + PfGW456L13_2427 0.63 -0.5
2,691,386 + PfGW456L13_2427 0.63 -1.6
2,691,387 - PfGW456L13_2427 0.63 +1.4
2,691,387 - PfGW456L13_2427 0.63 -0.7
2,691,458 + PfGW456L13_2427 0.70 -1.1
2,691,458 + PfGW456L13_2427 0.70 +0.1
2,691,459 - PfGW456L13_2427 0.70 -0.2
2,691,459 - PfGW456L13_2427 0.70 -0.3
2,691,459 - PfGW456L13_2427 0.70 -0.3
2,691,464 + PfGW456L13_2427 0.71 -0.8
2,691,464 + PfGW456L13_2427 0.71 +1.2
2,691,465 - PfGW456L13_2427 0.71 -1.1
2,691,715 + -0.8
2,691,715 + +0.0
2,691,716 - -0.7
2,691,736 + -0.2
2,691,736 + -1.6
2,691,800 + -1.7
2,691,816 + +0.4
2,691,843 + -0.2
2,691,843 + -0.1
2,691,891 + +0.5
2,691,891 + +1.1
2,691,891 + +1.0
2,691,892 - -0.3
2,691,892 - +0.3
2,691,892 - +0.2
2,691,892 - +0.4
2,691,892 - -0.2
2,691,892 - +0.3
2,691,895 + -0.8
2,691,896 - -0.3
2,691,896 - +0.9
2,691,896 - -0.3
2,691,896 - -0.1
2,691,896 - -0.7
2,692,083 - +1.3
2,692,083 - +0.6
2,692,083 - -0.1
2,692,083 - -0.0
2,692,391 + -0.2
2,692,406 + -1.0
2,692,407 - +0.4
2,692,407 - +1.0
2,692,462 + -0.2
2,692,462 + -0.4
2,692,504 + -1.3
2,692,504 + -0.3
2,692,504 + +0.2
2,692,505 - +0.0
2,692,505 - -1.0
2,692,519 + -1.2
2,692,519 + -0.1
2,692,519 + +0.2
2,692,520 - -0.6
2,692,520 - +0.6
2,692,688 - -0.4
2,692,688 - -0.9
2,692,688 - +0.0
2,692,716 + -0.0
2,692,730 + -1.1
2,692,730 + +0.7

Or see this region's nucleotide sequence