Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_170

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_169 and PfGW456L13_170 are separated by 41 nucleotidesPfGW456L13_170 and PfGW456L13_171 are separated by 18 nucleotides PfGW456L13_169 - Predicted signal transduction protein, at 193,022 to 194,560 _169 PfGW456L13_170 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 194,602 to 195,417 _170 PfGW456L13_171 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 195,436 to 196,296 _171 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 193.659 kb on - strand, within PfGW456L13_169at 193.795 kb on + strand, within PfGW456L13_169at 193.795 kb on + strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169at 193.871 kb on + strand, within PfGW456L13_169at 193.872 kb on - strand, within PfGW456L13_169at 193.886 kb on + strand, within PfGW456L13_169at 193.886 kb on + strand, within PfGW456L13_169at 193.886 kb on + strand, within PfGW456L13_169at 193.887 kb on - strand, within PfGW456L13_169at 194.050 kb on + strand, within PfGW456L13_169at 194.051 kb on - strand, within PfGW456L13_169at 194.542 kb on + strandat 194.559 kb on - strandat 194.569 kb on - strandat 194.569 kb on - strandat 194.754 kb on + strand, within PfGW456L13_170at 194.851 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 195.319 kb on + strand, within PfGW456L13_170at 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.314 kb on - strandat 196.407 kb on + strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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193,659 - PfGW456L13_169 0.41 -0.3
193,795 + PfGW456L13_169 0.50 -1.0
193,795 + PfGW456L13_169 0.50 +0.9
193,796 - PfGW456L13_169 0.50 -0.9
193,796 - PfGW456L13_169 0.50 +0.3
193,796 - PfGW456L13_169 0.50 +0.2
193,871 + PfGW456L13_169 0.55 -0.5
193,872 - PfGW456L13_169 0.55 +0.3
193,886 + PfGW456L13_169 0.56 -1.4
193,886 + PfGW456L13_169 0.56 +0.0
193,886 + PfGW456L13_169 0.56 -0.1
193,887 - PfGW456L13_169 0.56 +0.7
194,050 + PfGW456L13_169 0.67 +0.2
194,051 - PfGW456L13_169 0.67 -0.6
194,542 + -0.3
194,559 - +0.5
194,569 - -0.1
194,569 - +0.8
194,754 + PfGW456L13_170 0.19 -0.8
194,851 + PfGW456L13_170 0.31 -1.6
194,860 + PfGW456L13_170 0.32 -3.3
194,860 + PfGW456L13_170 0.32 -0.3
194,860 + PfGW456L13_170 0.32 +0.8
194,929 + PfGW456L13_170 0.40 -0.4
194,929 + PfGW456L13_170 0.40 -1.0
194,929 + PfGW456L13_170 0.40 +0.1
194,929 + PfGW456L13_170 0.40 -1.4
194,929 + PfGW456L13_170 0.40 -0.5
194,929 + PfGW456L13_170 0.40 -2.0
194,929 + PfGW456L13_170 0.40 -1.0
194,935 + PfGW456L13_170 0.41 -2.0
194,935 + PfGW456L13_170 0.41 +0.7
194,935 + PfGW456L13_170 0.41 -0.4
194,935 + PfGW456L13_170 0.41 +1.2
194,935 + PfGW456L13_170 0.41 -0.5
194,937 + PfGW456L13_170 0.41 -0.0
194,937 + PfGW456L13_170 0.41 -0.6
194,937 + PfGW456L13_170 0.41 -0.6
194,937 + PfGW456L13_170 0.41 -0.7
194,937 + PfGW456L13_170 0.41 -1.4
194,937 + PfGW456L13_170 0.41 -0.0
194,939 + PfGW456L13_170 0.41 -0.3
194,939 + PfGW456L13_170 0.41 +0.4
194,939 + PfGW456L13_170 0.41 -0.6
194,939 + PfGW456L13_170 0.41 -1.3
194,939 + PfGW456L13_170 0.41 -0.8
194,939 + PfGW456L13_170 0.41 +0.1
194,939 + PfGW456L13_170 0.41 -1.2
194,939 + PfGW456L13_170 0.41 -0.2
194,939 + PfGW456L13_170 0.41 -1.6
194,939 + PfGW456L13_170 0.41 -2.2
194,939 + PfGW456L13_170 0.41 -1.3
194,939 + PfGW456L13_170 0.41 -0.5
194,939 + PfGW456L13_170 0.41 -1.1
194,939 + PfGW456L13_170 0.41 -0.7
194,939 + PfGW456L13_170 0.41 -0.5
194,939 + PfGW456L13_170 0.41 -0.5
194,939 + PfGW456L13_170 0.41 -1.0
194,939 + PfGW456L13_170 0.41 -1.2
194,939 + PfGW456L13_170 0.41 +1.2
194,939 + PfGW456L13_170 0.41 +0.4
194,939 + PfGW456L13_170 0.41 -0.4
194,939 + PfGW456L13_170 0.41 -0.7
194,939 + PfGW456L13_170 0.41 -1.1
194,939 + PfGW456L13_170 0.41 +0.5
194,939 + PfGW456L13_170 0.41 +0.4
194,939 + PfGW456L13_170 0.41 +0.5
194,939 + PfGW456L13_170 0.41 -1.6
194,939 + PfGW456L13_170 0.41 -0.6
194,939 + PfGW456L13_170 0.41 -0.6
194,939 + PfGW456L13_170 0.41 -0.2
194,939 + PfGW456L13_170 0.41 -0.1
195,319 + PfGW456L13_170 0.88 -0.1
196,307 + -0.3
196,307 + -0.3
196,307 + +0.0
196,307 + +0.1
196,307 + -0.4
196,307 + +0.3
196,307 + +0.2
196,307 + +0.6
196,307 + +0.9
196,307 + -0.9
196,307 + -0.7
196,308 - -1.5
196,308 - +1.0
196,308 - +0.9
196,308 - -0.4
196,308 - +0.0
196,308 - -0.9
196,308 - -0.1
196,308 - +0.0
196,308 - -0.3
196,308 - +2.5
196,308 - +0.6
196,308 - +0.1
196,308 - -0.2
196,308 - -0.2
196,308 - +0.2
196,314 - +0.1
196,407 + +0.4
196,408 - +0.4
196,408 - -0.0
196,408 - +0.4
196,408 - -0.4
196,408 - +0.3
196,408 - +0.2

Or see this region's nucleotide sequence