Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1313

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1311 and PfGW456L13_1312 are separated by 127 nucleotidesPfGW456L13_1312 and PfGW456L13_1313 overlap by 4 nucleotidesPfGW456L13_1313 and PfGW456L13_1314 are separated by 47 nucleotidesPfGW456L13_1314 and PfGW456L13_1315 are separated by 16 nucleotides PfGW456L13_1311 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,452,307 to 1,452,771 _1311 PfGW456L13_1312 - Ribonucleotide reductase transcriptional regulator NrdR, at 1,452,899 to 1,453,363 _1312 PfGW456L13_1313 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 1,453,360 to 1,454,493 _1313 PfGW456L13_1314 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 1,454,541 to 1,455,206 _1314 PfGW456L13_1315 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 1,455,223 to 1,456,314 _1315 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -1 0 1at 1452.360 kb on + strand, within PfGW456L13_1311at 1452.534 kb on + strand, within PfGW456L13_1311at 1452.763 kb on + strandat 1452.764 kb on - strandat 1452.783 kb on + strandat 1452.822 kb on + strandat 1452.822 kb on + strandat 1452.822 kb on + strandat 1452.822 kb on + strandat 1452.823 kb on - strandat 1452.823 kb on - strandat 1452.836 kb on + strandat 1452.837 kb on - strandat 1452.837 kb on - strandat 1452.864 kb on + strandat 1453.268 kb on + strand, within PfGW456L13_1312at 1453.268 kb on + strand, within PfGW456L13_1312at 1453.268 kb on + strand, within PfGW456L13_1312at 1453.268 kb on + strand, within PfGW456L13_1312at 1453.268 kb on + strand, within PfGW456L13_1312at 1453.289 kb on + strand, within PfGW456L13_1312at 1454.490 kb on - strandat 1454.491 kb on + strandat 1454.508 kb on + strandat 1454.508 kb on + strandat 1454.508 kb on + strandat 1455.234 kb on + strandat 1455.235 kb on - strandat 1455.235 kb on - strandat 1455.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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1,452,360 + PfGW456L13_1311 0.11 -0.5
1,452,534 + PfGW456L13_1311 0.49 +0.7
1,452,763 + -0.0
1,452,764 - +0.0
1,452,783 + +0.5
1,452,822 + -0.3
1,452,822 + -0.3
1,452,822 + +0.0
1,452,822 + -0.0
1,452,823 - -0.4
1,452,823 - -0.1
1,452,836 + -0.7
1,452,837 - +0.1
1,452,837 - +0.3
1,452,864 + +0.5
1,453,268 + PfGW456L13_1312 0.79 -0.4
1,453,268 + PfGW456L13_1312 0.79 -0.3
1,453,268 + PfGW456L13_1312 0.79 -0.6
1,453,268 + PfGW456L13_1312 0.79 -0.3
1,453,268 + PfGW456L13_1312 0.79 -1.6
1,453,289 + PfGW456L13_1312 0.84 -1.1
1,454,490 - -0.5
1,454,491 + -0.0
1,454,508 + +0.3
1,454,508 + +1.0
1,454,508 + +0.3
1,455,234 + +0.0
1,455,235 - +0.7
1,455,235 - -0.9
1,455,235 - -1.2

Or see this region's nucleotide sequence