Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_125

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_124 and PfGW456L13_125 are separated by 6 nucleotidesPfGW456L13_125 and PfGW456L13_126 are separated by 191 nucleotides PfGW456L13_124 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 139,981 to 141,114 _124 PfGW456L13_125 - hypothetical protein, at 141,121 to 141,285 _125 PfGW456L13_126 - L-pipecolate oxidase (1.5.3.7), at 141,477 to 142,760 _126 Position (kb) 141 142Strain fitness (log2 ratio) -1 0 1 2at 140.189 kb on + strand, within PfGW456L13_124at 140.189 kb on + strand, within PfGW456L13_124at 140.190 kb on - strand, within PfGW456L13_124at 140.190 kb on - strand, within PfGW456L13_124at 140.196 kb on - strand, within PfGW456L13_124at 140.196 kb on - strand, within PfGW456L13_124at 140.196 kb on - strand, within PfGW456L13_124at 140.196 kb on - strand, within PfGW456L13_124at 140.204 kb on + strand, within PfGW456L13_124at 140.204 kb on + strand, within PfGW456L13_124at 140.204 kb on + strand, within PfGW456L13_124at 140.444 kb on + strand, within PfGW456L13_124at 140.445 kb on - strand, within PfGW456L13_124at 140.522 kb on + strand, within PfGW456L13_124at 140.522 kb on + strand, within PfGW456L13_124at 140.522 kb on + strand, within PfGW456L13_124at 140.523 kb on - strand, within PfGW456L13_124at 140.523 kb on - strand, within PfGW456L13_124at 140.523 kb on - strand, within PfGW456L13_124at 140.523 kb on - strand, within PfGW456L13_124at 140.537 kb on - strand, within PfGW456L13_124at 140.565 kb on + strand, within PfGW456L13_124at 140.565 kb on + strand, within PfGW456L13_124at 140.565 kb on + strand, within PfGW456L13_124at 140.566 kb on - strand, within PfGW456L13_124at 140.566 kb on - strand, within PfGW456L13_124at 140.588 kb on + strand, within PfGW456L13_124at 140.588 kb on + strand, within PfGW456L13_124at 140.588 kb on + strand, within PfGW456L13_124at 140.589 kb on - strand, within PfGW456L13_124at 140.645 kb on + strand, within PfGW456L13_124at 140.645 kb on + strand, within PfGW456L13_124at 140.645 kb on + strand, within PfGW456L13_124at 140.646 kb on - strand, within PfGW456L13_124at 140.646 kb on - strand, within PfGW456L13_124at 140.646 kb on - strand, within PfGW456L13_124at 140.646 kb on - strand, within PfGW456L13_124at 140.688 kb on + strand, within PfGW456L13_124at 140.688 kb on + strand, within PfGW456L13_124at 140.688 kb on + strand, within PfGW456L13_124at 140.688 kb on + strand, within PfGW456L13_124at 140.688 kb on + strand, within PfGW456L13_124at 140.689 kb on - strand, within PfGW456L13_124at 140.689 kb on - strand, within PfGW456L13_124at 140.689 kb on - strand, within PfGW456L13_124at 140.689 kb on - strand, within PfGW456L13_124at 140.689 kb on - strand, within PfGW456L13_124at 140.771 kb on + strand, within PfGW456L13_124at 140.772 kb on - strand, within PfGW456L13_124at 140.772 kb on - strand, within PfGW456L13_124at 140.902 kb on + strand, within PfGW456L13_124at 140.902 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.972 kb on + strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 140.973 kb on - strand, within PfGW456L13_124at 141.098 kb on + strandat 141.139 kb on - strand, within PfGW456L13_125at 141.283 kb on + strandat 141.284 kb on - strandat 141.284 kb on - strandat 141.297 kb on - strandat 141.342 kb on - strandat 141.363 kb on + strandat 141.363 kb on + strandat 141.364 kb on - strandat 141.364 kb on - strandat 141.408 kb on + strandat 141.408 kb on + strandat 141.408 kb on + strandat 141.409 kb on - strandat 141.409 kb on - strandat 141.409 kb on - strandat 141.423 kb on + strandat 141.423 kb on + strandat 141.423 kb on + strandat 141.424 kb on - strandat 141.424 kb on - strandat 141.532 kb on + strandat 141.532 kb on + strandat 141.532 kb on + strandat 141.532 kb on + strandat 141.532 kb on + strandat 141.532 kb on + strandat 141.533 kb on - strandat 141.533 kb on - strandat 141.533 kb on - strandat 141.533 kb on - strandat 141.533 kb on - strandat 141.533 kb on - strandat 141.612 kb on - strand, within PfGW456L13_126at 141.612 kb on - strand, within PfGW456L13_126at 141.619 kb on + strand, within PfGW456L13_126at 141.793 kb on + strand, within PfGW456L13_126at 141.793 kb on + strand, within PfGW456L13_126at 141.793 kb on + strand, within PfGW456L13_126at 141.793 kb on + strand, within PfGW456L13_126at 141.995 kb on - strand, within PfGW456L13_126at 141.997 kb on + strand, within PfGW456L13_126at 141.997 kb on + strand, within PfGW456L13_126at 141.997 kb on + strand, within PfGW456L13_126at 141.997 kb on + strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 141.998 kb on - strand, within PfGW456L13_126at 142.000 kb on + strand, within PfGW456L13_126at 142.048 kb on + strand, within PfGW456L13_126at 142.049 kb on - strand, within PfGW456L13_126at 142.049 kb on - strand, within PfGW456L13_126at 142.105 kb on - strand, within PfGW456L13_126at 142.105 kb on - strand, within PfGW456L13_126at 142.105 kb on - strand, within PfGW456L13_126at 142.204 kb on + strand, within PfGW456L13_126at 142.205 kb on - strand, within PfGW456L13_126at 142.205 kb on - strand, within PfGW456L13_126at 142.205 kb on - strand, within PfGW456L13_126

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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140,189 + PfGW456L13_124 0.18 -1.1
140,189 + PfGW456L13_124 0.18 +0.2
140,190 - PfGW456L13_124 0.18 -0.2
140,190 - PfGW456L13_124 0.18 -0.7
140,196 - PfGW456L13_124 0.19 -0.0
140,196 - PfGW456L13_124 0.19 -0.3
140,196 - PfGW456L13_124 0.19 -0.4
140,196 - PfGW456L13_124 0.19 +0.3
140,204 + PfGW456L13_124 0.20 -0.9
140,204 + PfGW456L13_124 0.20 -0.0
140,204 + PfGW456L13_124 0.20 -0.4
140,444 + PfGW456L13_124 0.41 +0.4
140,445 - PfGW456L13_124 0.41 -0.1
140,522 + PfGW456L13_124 0.48 +0.2
140,522 + PfGW456L13_124 0.48 +0.3
140,522 + PfGW456L13_124 0.48 +0.0
140,523 - PfGW456L13_124 0.48 +0.6
140,523 - PfGW456L13_124 0.48 -0.7
140,523 - PfGW456L13_124 0.48 -0.4
140,523 - PfGW456L13_124 0.48 +1.0
140,537 - PfGW456L13_124 0.49 +0.6
140,565 + PfGW456L13_124 0.51 +0.9
140,565 + PfGW456L13_124 0.51 +1.3
140,565 + PfGW456L13_124 0.51 +0.3
140,566 - PfGW456L13_124 0.52 -0.9
140,566 - PfGW456L13_124 0.52 -0.3
140,588 + PfGW456L13_124 0.54 -1.7
140,588 + PfGW456L13_124 0.54 +0.4
140,588 + PfGW456L13_124 0.54 -0.6
140,589 - PfGW456L13_124 0.54 +1.0
140,645 + PfGW456L13_124 0.59 +0.5
140,645 + PfGW456L13_124 0.59 +1.2
140,645 + PfGW456L13_124 0.59 -0.0
140,646 - PfGW456L13_124 0.59 +0.3
140,646 - PfGW456L13_124 0.59 +0.7
140,646 - PfGW456L13_124 0.59 -0.5
140,646 - PfGW456L13_124 0.59 +0.2
140,688 + PfGW456L13_124 0.62 +0.4
140,688 + PfGW456L13_124 0.62 -0.8
140,688 + PfGW456L13_124 0.62 +0.2
140,688 + PfGW456L13_124 0.62 +0.3
140,688 + PfGW456L13_124 0.62 -0.3
140,689 - PfGW456L13_124 0.62 +0.0
140,689 - PfGW456L13_124 0.62 +0.2
140,689 - PfGW456L13_124 0.62 +0.1
140,689 - PfGW456L13_124 0.62 -1.1
140,689 - PfGW456L13_124 0.62 -0.3
140,771 + PfGW456L13_124 0.70 -0.5
140,772 - PfGW456L13_124 0.70 +0.3
140,772 - PfGW456L13_124 0.70 +0.7
140,902 + PfGW456L13_124 0.81 +0.1
140,902 + PfGW456L13_124 0.81 -0.3
140,972 + PfGW456L13_124 0.87 -0.5
140,972 + PfGW456L13_124 0.87 -0.3
140,972 + PfGW456L13_124 0.87 -0.8
140,972 + PfGW456L13_124 0.87 +0.2
140,972 + PfGW456L13_124 0.87 +0.4
140,972 + PfGW456L13_124 0.87 +1.8
140,972 + PfGW456L13_124 0.87 -0.9
140,972 + PfGW456L13_124 0.87 +0.6
140,972 + PfGW456L13_124 0.87 -0.7
140,972 + PfGW456L13_124 0.87 -1.0
140,972 + PfGW456L13_124 0.87 -0.4
140,972 + PfGW456L13_124 0.87 -1.0
140,973 - PfGW456L13_124 0.87 -0.6
140,973 - PfGW456L13_124 0.87 -0.8
140,973 - PfGW456L13_124 0.87 -0.6
140,973 - PfGW456L13_124 0.87 +0.0
140,973 - PfGW456L13_124 0.87 -0.7
140,973 - PfGW456L13_124 0.87 +0.5
140,973 - PfGW456L13_124 0.87 +0.2
140,973 - PfGW456L13_124 0.87 -1.0
140,973 - PfGW456L13_124 0.87 +0.0
140,973 - PfGW456L13_124 0.87 -1.1
140,973 - PfGW456L13_124 0.87 -0.3
140,973 - PfGW456L13_124 0.87 -1.2
140,973 - PfGW456L13_124 0.87 +0.1
141,098 + -0.5
141,139 - PfGW456L13_125 0.11 -0.7
141,283 + +0.9
141,284 - +0.1
141,284 - +0.4
141,297 - +0.4
141,342 - +0.1
141,363 + +0.7
141,363 + +0.0
141,364 - +0.0
141,364 - +0.2
141,408 + -1.4
141,408 + +0.4
141,408 + +0.8
141,409 - +0.1
141,409 - +0.0
141,409 - -0.4
141,423 + +0.4
141,423 + -0.9
141,423 + -0.9
141,424 - -0.0
141,424 - +0.4
141,532 + -0.1
141,532 + +0.4
141,532 + +0.4
141,532 + -0.5
141,532 + +0.7
141,532 + +0.6
141,533 - +0.2
141,533 - -0.0
141,533 - +0.2
141,533 - -0.5
141,533 - +0.4
141,533 - +0.6
141,612 - PfGW456L13_126 0.11 +0.6
141,612 - PfGW456L13_126 0.11 +0.8
141,619 + PfGW456L13_126 0.11 +0.6
141,793 + PfGW456L13_126 0.25 +0.3
141,793 + PfGW456L13_126 0.25 -0.6
141,793 + PfGW456L13_126 0.25 -1.1
141,793 + PfGW456L13_126 0.25 -1.0
141,995 - PfGW456L13_126 0.40 -1.1
141,997 + PfGW456L13_126 0.40 -0.2
141,997 + PfGW456L13_126 0.40 -0.0
141,997 + PfGW456L13_126 0.40 +0.2
141,997 + PfGW456L13_126 0.40 -0.7
141,998 - PfGW456L13_126 0.41 +0.0
141,998 - PfGW456L13_126 0.41 -0.3
141,998 - PfGW456L13_126 0.41 +0.2
141,998 - PfGW456L13_126 0.41 +2.7
141,998 - PfGW456L13_126 0.41 -0.8
141,998 - PfGW456L13_126 0.41 -0.0
141,998 - PfGW456L13_126 0.41 -0.3
142,000 + PfGW456L13_126 0.41 +1.3
142,048 + PfGW456L13_126 0.44 -0.7
142,049 - PfGW456L13_126 0.45 -0.1
142,049 - PfGW456L13_126 0.45 +0.4
142,105 - PfGW456L13_126 0.49 -0.7
142,105 - PfGW456L13_126 0.49 -0.0
142,105 - PfGW456L13_126 0.49 -1.2
142,204 + PfGW456L13_126 0.57 +0.9
142,205 - PfGW456L13_126 0.57 +0.5
142,205 - PfGW456L13_126 0.57 +0.0
142,205 - PfGW456L13_126 0.57 +0.2

Or see this region's nucleotide sequence