Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS24485

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24480 and PFLU_RS24485 are separated by 20 nucleotidesPFLU_RS24485 and PFLU_RS24490 are separated by 69 nucleotides PFLU_RS24480: PFLU_RS24480 - proline--tRNA ligase, at 5,484,534 to 5,486,249 _RS24480 PFLU_RS24485: PFLU_RS24485 - hypothetical protein, at 5,486,270 to 5,487,223 _RS24485 PFLU_RS24490: PFLU_RS24490 - DNA polymerase IV, at 5,487,293 to 5,488,351 _RS24490 Position (kb) 5486 5487 5488Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5486.237 kb on + strandat 5486.237 kb on + strandat 5486.386 kb on + strand, within PFLU_RS24485at 5486.386 kb on + strand, within PFLU_RS24485at 5486.386 kb on + strand, within PFLU_RS24485at 5486.386 kb on + strand, within PFLU_RS24485at 5486.386 kb on + strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.387 kb on - strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.418 kb on + strand, within PFLU_RS24485at 5486.419 kb on - strand, within PFLU_RS24485at 5486.522 kb on + strand, within PFLU_RS24485at 5486.522 kb on + strand, within PFLU_RS24485at 5486.523 kb on - strand, within PFLU_RS24485at 5486.532 kb on - strand, within PFLU_RS24485at 5486.552 kb on + strand, within PFLU_RS24485at 5486.553 kb on - strand, within PFLU_RS24485at 5486.553 kb on - strand, within PFLU_RS24485at 5486.663 kb on + strand, within PFLU_RS24485at 5486.663 kb on + strand, within PFLU_RS24485at 5486.664 kb on - strand, within PFLU_RS24485at 5486.664 kb on - strand, within PFLU_RS24485at 5486.664 kb on - strand, within PFLU_RS24485at 5487.020 kb on + strand, within PFLU_RS24485at 5487.020 kb on + strand, within PFLU_RS24485at 5487.020 kb on + strand, within PFLU_RS24485at 5487.020 kb on + strand, within PFLU_RS24485at 5487.021 kb on - strand, within PFLU_RS24485at 5487.021 kb on - strand, within PFLU_RS24485at 5487.021 kb on - strand, within PFLU_RS24485at 5487.021 kb on - strand, within PFLU_RS24485at 5487.199 kb on - strandat 5487.294 kb on + strandat 5487.294 kb on + strandat 5487.295 kb on - strandat 5487.411 kb on + strand, within PFLU_RS24490at 5487.411 kb on + strand, within PFLU_RS24490at 5487.412 kb on - strand, within PFLU_RS24490at 5487.412 kb on - strand, within PFLU_RS24490at 5487.412 kb on - strand, within PFLU_RS24490at 5487.481 kb on + strand, within PFLU_RS24490at 5487.504 kb on + strand, within PFLU_RS24490at 5487.600 kb on + strand, within PFLU_RS24490at 5487.601 kb on - strand, within PFLU_RS24490at 5487.601 kb on - strand, within PFLU_RS24490at 5487.601 kb on - strand, within PFLU_RS24490at 5487.601 kb on - strand, within PFLU_RS24490at 5487.611 kb on + strand, within PFLU_RS24490at 5487.611 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.755 kb on + strand, within PFLU_RS24490at 5487.756 kb on - strand, within PFLU_RS24490at 5487.756 kb on - strand, within PFLU_RS24490at 5487.853 kb on + strand, within PFLU_RS24490at 5488.029 kb on + strand, within PFLU_RS24490at 5488.030 kb on - strand, within PFLU_RS24490at 5488.030 kb on - strand, within PFLU_RS24490at 5488.030 kb on - strand, within PFLU_RS24490at 5488.068 kb on + strand, within PFLU_RS24490at 5488.068 kb on + strand, within PFLU_RS24490at 5488.069 kb on - strand, within PFLU_RS24490at 5488.069 kb on - strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.108 kb on + strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.109 kb on - strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.110 kb on + strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.111 kb on - strand, within PFLU_RS24490at 5488.195 kb on - strand, within PFLU_RS24490at 5488.209 kb on + strand, within PFLU_RS24490at 5488.209 kb on + strand, within PFLU_RS24490at 5488.209 kb on + strand, within PFLU_RS24490at 5488.209 kb on + strand, within PFLU_RS24490at 5488.209 kb on + strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.210 kb on - strand, within PFLU_RS24490at 5488.219 kb on + strand, within PFLU_RS24490at 5488.220 kb on - strand, within PFLU_RS24490

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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5,486,237 + -0.1
5,486,237 + -0.6
5,486,386 + PFLU_RS24485 0.12 -2.8
5,486,386 + PFLU_RS24485 0.12 -1.8
5,486,386 + PFLU_RS24485 0.12 -2.3
5,486,386 + PFLU_RS24485 0.12 -3.9
5,486,386 + PFLU_RS24485 0.12 -4.6
5,486,387 - PFLU_RS24485 0.12 -1.2
5,486,387 - PFLU_RS24485 0.12 -2.9
5,486,387 - PFLU_RS24485 0.12 -4.0
5,486,387 - PFLU_RS24485 0.12 -4.4
5,486,387 - PFLU_RS24485 0.12 -2.8
5,486,387 - PFLU_RS24485 0.12 -3.6
5,486,418 + PFLU_RS24485 0.16 -4.4
5,486,418 + PFLU_RS24485 0.16 -2.9
5,486,418 + PFLU_RS24485 0.16 -3.3
5,486,418 + PFLU_RS24485 0.16 -0.4
5,486,418 + PFLU_RS24485 0.16 -2.9
5,486,418 + PFLU_RS24485 0.16 -3.9
5,486,419 - PFLU_RS24485 0.16 -4.3
5,486,522 + PFLU_RS24485 0.26 -1.1
5,486,522 + PFLU_RS24485 0.26 -3.3
5,486,523 - PFLU_RS24485 0.27 -4.2
5,486,532 - PFLU_RS24485 0.27 -1.8
5,486,552 + PFLU_RS24485 0.30 -4.5
5,486,553 - PFLU_RS24485 0.30 -1.3
5,486,553 - PFLU_RS24485 0.30 -1.9
5,486,663 + PFLU_RS24485 0.41 -3.1
5,486,663 + PFLU_RS24485 0.41 -4.5
5,486,664 - PFLU_RS24485 0.41 -3.5
5,486,664 - PFLU_RS24485 0.41 -3.7
5,486,664 - PFLU_RS24485 0.41 -4.0
5,487,020 + PFLU_RS24485 0.79 -5.0
5,487,020 + PFLU_RS24485 0.79 -3.0
5,487,020 + PFLU_RS24485 0.79 -3.7
5,487,020 + PFLU_RS24485 0.79 -3.6
5,487,021 - PFLU_RS24485 0.79 -1.7
5,487,021 - PFLU_RS24485 0.79 -1.5
5,487,021 - PFLU_RS24485 0.79 -3.5
5,487,021 - PFLU_RS24485 0.79 -3.4
5,487,199 - -1.3
5,487,294 + +0.1
5,487,294 + +2.6
5,487,295 - -0.2
5,487,411 + PFLU_RS24490 0.11 -0.3
5,487,411 + PFLU_RS24490 0.11 +1.1
5,487,412 - PFLU_RS24490 0.11 -0.5
5,487,412 - PFLU_RS24490 0.11 -0.7
5,487,412 - PFLU_RS24490 0.11 +0.3
5,487,481 + PFLU_RS24490 0.18 +0.3
5,487,504 + PFLU_RS24490 0.20 +0.5
5,487,600 + PFLU_RS24490 0.29 -1.2
5,487,601 - PFLU_RS24490 0.29 +0.5
5,487,601 - PFLU_RS24490 0.29 -0.6
5,487,601 - PFLU_RS24490 0.29 +0.3
5,487,601 - PFLU_RS24490 0.29 +0.0
5,487,611 + PFLU_RS24490 0.30 +2.1
5,487,611 + PFLU_RS24490 0.30 +0.3
5,487,755 + PFLU_RS24490 0.44 -2.1
5,487,755 + PFLU_RS24490 0.44 +0.1
5,487,755 + PFLU_RS24490 0.44 -0.4
5,487,755 + PFLU_RS24490 0.44 +1.2
5,487,755 + PFLU_RS24490 0.44 +0.8
5,487,755 + PFLU_RS24490 0.44 +2.7
5,487,755 + PFLU_RS24490 0.44 -0.0
5,487,756 - PFLU_RS24490 0.44 +0.6
5,487,756 - PFLU_RS24490 0.44 +1.4
5,487,853 + PFLU_RS24490 0.53 +1.0
5,488,029 + PFLU_RS24490 0.69 -2.3
5,488,030 - PFLU_RS24490 0.70 -2.6
5,488,030 - PFLU_RS24490 0.70 +0.1
5,488,030 - PFLU_RS24490 0.70 -0.2
5,488,068 + PFLU_RS24490 0.73 -1.6
5,488,068 + PFLU_RS24490 0.73 -0.4
5,488,069 - PFLU_RS24490 0.73 +0.8
5,488,069 - PFLU_RS24490 0.73 -0.3
5,488,108 + PFLU_RS24490 0.77 -3.2
5,488,108 + PFLU_RS24490 0.77 -0.4
5,488,108 + PFLU_RS24490 0.77 -1.7
5,488,108 + PFLU_RS24490 0.77 +1.0
5,488,108 + PFLU_RS24490 0.77 -0.1
5,488,108 + PFLU_RS24490 0.77 +0.5
5,488,108 + PFLU_RS24490 0.77 +2.2
5,488,108 + PFLU_RS24490 0.77 +0.3
5,488,109 - PFLU_RS24490 0.77 +0.2
5,488,109 - PFLU_RS24490 0.77 +0.4
5,488,109 - PFLU_RS24490 0.77 +0.2
5,488,109 - PFLU_RS24490 0.77 -1.9
5,488,109 - PFLU_RS24490 0.77 -0.5
5,488,109 - PFLU_RS24490 0.77 +0.2
5,488,109 - PFLU_RS24490 0.77 +0.7
5,488,110 + PFLU_RS24490 0.77 +0.2
5,488,110 + PFLU_RS24490 0.77 -0.2
5,488,110 + PFLU_RS24490 0.77 +0.2
5,488,110 + PFLU_RS24490 0.77 -0.4
5,488,110 + PFLU_RS24490 0.77 +1.2
5,488,110 + PFLU_RS24490 0.77 +0.6
5,488,110 + PFLU_RS24490 0.77 -0.1
5,488,110 + PFLU_RS24490 0.77 -0.3
5,488,110 + PFLU_RS24490 0.77 -1.3
5,488,110 + PFLU_RS24490 0.77 +1.0
5,488,110 + PFLU_RS24490 0.77 +0.9
5,488,110 + PFLU_RS24490 0.77 -2.8
5,488,110 + PFLU_RS24490 0.77 +0.3
5,488,110 + PFLU_RS24490 0.77 +0.8
5,488,110 + PFLU_RS24490 0.77 +0.5
5,488,110 + PFLU_RS24490 0.77 +0.6
5,488,110 + PFLU_RS24490 0.77 -0.7
5,488,110 + PFLU_RS24490 0.77 +1.1
5,488,110 + PFLU_RS24490 0.77 +0.1
5,488,110 + PFLU_RS24490 0.77 +0.1
5,488,110 + PFLU_RS24490 0.77 -0.2
5,488,110 + PFLU_RS24490 0.77 -0.1
5,488,110 + PFLU_RS24490 0.77 +1.8
5,488,110 + PFLU_RS24490 0.77 -1.2
5,488,110 + PFLU_RS24490 0.77 +1.2
5,488,110 + PFLU_RS24490 0.77 +1.6
5,488,110 + PFLU_RS24490 0.77 +1.0
5,488,110 + PFLU_RS24490 0.77 +1.1
5,488,110 + PFLU_RS24490 0.77 -1.3
5,488,110 + PFLU_RS24490 0.77 +1.0
5,488,110 + PFLU_RS24490 0.77 -0.1
5,488,110 + PFLU_RS24490 0.77 +0.5
5,488,110 + PFLU_RS24490 0.77 -0.7
5,488,110 + PFLU_RS24490 0.77 +0.8
5,488,110 + PFLU_RS24490 0.77 +1.2
5,488,110 + PFLU_RS24490 0.77 -2.0
5,488,110 + PFLU_RS24490 0.77 -0.1
5,488,111 - PFLU_RS24490 0.77 -0.3
5,488,111 - PFLU_RS24490 0.77 +1.0
5,488,111 - PFLU_RS24490 0.77 +0.0
5,488,111 - PFLU_RS24490 0.77 +0.9
5,488,111 - PFLU_RS24490 0.77 +1.1
5,488,111 - PFLU_RS24490 0.77 -0.8
5,488,111 - PFLU_RS24490 0.77 -1.5
5,488,111 - PFLU_RS24490 0.77 +0.8
5,488,111 - PFLU_RS24490 0.77 -2.1
5,488,111 - PFLU_RS24490 0.77 -2.1
5,488,111 - PFLU_RS24490 0.77 -0.3
5,488,111 - PFLU_RS24490 0.77 +0.7
5,488,111 - PFLU_RS24490 0.77 +1.5
5,488,111 - PFLU_RS24490 0.77 +1.4
5,488,111 - PFLU_RS24490 0.77 +0.2
5,488,111 - PFLU_RS24490 0.77 -1.4
5,488,111 - PFLU_RS24490 0.77 -1.5
5,488,111 - PFLU_RS24490 0.77 +2.0
5,488,111 - PFLU_RS24490 0.77 -0.2
5,488,111 - PFLU_RS24490 0.77 +0.2
5,488,111 - PFLU_RS24490 0.77 -0.0
5,488,111 - PFLU_RS24490 0.77 -0.1
5,488,111 - PFLU_RS24490 0.77 +0.7
5,488,111 - PFLU_RS24490 0.77 +1.7
5,488,111 - PFLU_RS24490 0.77 +1.4
5,488,111 - PFLU_RS24490 0.77 -1.2
5,488,111 - PFLU_RS24490 0.77 +0.7
5,488,111 - PFLU_RS24490 0.77 -1.8
5,488,111 - PFLU_RS24490 0.77 -0.9
5,488,111 - PFLU_RS24490 0.77 -0.8
5,488,111 - PFLU_RS24490 0.77 +0.2
5,488,111 - PFLU_RS24490 0.77 +0.8
5,488,111 - PFLU_RS24490 0.77 -0.9
5,488,111 - PFLU_RS24490 0.77 +0.5
5,488,111 - PFLU_RS24490 0.77 +0.6
5,488,111 - PFLU_RS24490 0.77 +1.2
5,488,111 - PFLU_RS24490 0.77 -0.1
5,488,111 - PFLU_RS24490 0.77 +0.3
5,488,111 - PFLU_RS24490 0.77 +0.7
5,488,195 - PFLU_RS24490 0.85 -0.9
5,488,209 + PFLU_RS24490 0.86 +1.6
5,488,209 + PFLU_RS24490 0.86 -0.1
5,488,209 + PFLU_RS24490 0.86 +0.5
5,488,209 + PFLU_RS24490 0.86 -0.7
5,488,209 + PFLU_RS24490 0.86 +1.1
5,488,210 - PFLU_RS24490 0.87 -1.3
5,488,210 - PFLU_RS24490 0.87 +1.9
5,488,210 - PFLU_RS24490 0.87 +1.2
5,488,210 - PFLU_RS24490 0.87 -0.6
5,488,210 - PFLU_RS24490 0.87 -0.1
5,488,210 - PFLU_RS24490 0.87 -1.0
5,488,210 - PFLU_RS24490 0.87 +0.7
5,488,219 + PFLU_RS24490 0.87 +1.2
5,488,220 - PFLU_RS24490 0.88 +0.4

Or see this region's nucleotide sequence