Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23225 and PFLU_RS23230 are separated by 11 nucleotides PFLU_RS23230 and PFLU_RS31780 are separated by 106 nucleotides PFLU_RS31780 and PFLU_RS23235 are separated by 49 nucleotides PFLU_RS23235 and PFLU_RS31785 are separated by 83 nucleotides PFLU_RS31785 and PFLU_RS23240 overlap by 47 nucleotides
PFLU_RS23225: PFLU_RS23225 - hypothetical protein, at 5,216,995 to 5,217,222
_RS23225
PFLU_RS23230: PFLU_RS23230 - hypothetical protein, at 5,217,234 to 5,217,413
_RS23230
PFLU_RS31780: PFLU_RS31780 - hypothetical protein, at 5,217,520 to 5,217,747
_RS31780
PFLU_RS23235: PFLU_RS23235 - Arc family DNA-binding protein, at 5,217,797 to 5,218,123
_RS23235
PFLU_RS31785: PFLU_RS31785 - hypothetical protein, at 5,218,207 to 5,218,386
_RS31785
PFLU_RS23240: PFLU_RS23240 - magnesium transporter, at 5,218,340 to 5,219,782
_RS23240
Position (kb) 5217
5218
5219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5216.945 kb on - strand at 5216.953 kb on + strand at 5216.954 kb on - strand at 5216.954 kb on - strand at 5216.990 kb on + strand at 5216.990 kb on + strand at 5216.990 kb on + strand at 5216.990 kb on + strand at 5216.990 kb on + strand at 5216.990 kb on + strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5216.991 kb on - strand at 5217.428 kb on + strand at 5217.429 kb on - strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.433 kb on + strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.434 kb on - strand at 5217.471 kb on - strand at 5217.471 kb on - strand at 5217.476 kb on + strand at 5217.482 kb on + strand at 5217.482 kb on + strand at 5217.483 kb on - strand at 5217.483 kb on - strand at 5217.544 kb on + strand, within PFLU_RS31780 at 5217.622 kb on - strand, within PFLU_RS31780 at 5217.642 kb on + strand, within PFLU_RS31780 at 5217.642 kb on + strand, within PFLU_RS31780 at 5217.738 kb on + strand at 5217.738 kb on + strand at 5217.782 kb on + strand at 5217.790 kb on + strand at 5217.790 kb on + strand at 5217.794 kb on + strand at 5217.794 kb on + strand at 5217.794 kb on + strand at 5217.794 kb on + strand at 5217.794 kb on + strand at 5217.794 kb on + strand at 5217.795 kb on - strand at 5217.795 kb on - strand at 5217.795 kb on - strand at 5217.795 kb on - strand at 5217.796 kb on + strand at 5217.797 kb on - strand at 5217.797 kb on - strand at 5217.797 kb on - strand at 5217.821 kb on + strand at 5217.852 kb on + strand, within PFLU_RS23235 at 5217.852 kb on + strand, within PFLU_RS23235 at 5217.852 kb on + strand, within PFLU_RS23235 at 5217.852 kb on + strand, within PFLU_RS23235 at 5217.852 kb on + strand, within PFLU_RS23235 at 5217.853 kb on - strand, within PFLU_RS23235 at 5218.189 kb on + strand at 5218.189 kb on + strand at 5218.189 kb on + strand at 5218.189 kb on + strand at 5218.189 kb on + strand at 5218.190 kb on - strand at 5218.190 kb on - strand at 5218.190 kb on - strand at 5218.191 kb on + strand at 5218.191 kb on + strand at 5218.191 kb on + strand at 5218.191 kb on + strand at 5218.192 kb on - strand at 5218.192 kb on - strand at 5218.192 kb on - strand at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.255 kb on + strand, within PFLU_RS31785 at 5218.256 kb on - strand, within PFLU_RS31785 at 5218.256 kb on - strand, within PFLU_RS31785 at 5218.545 kb on + strand, within PFLU_RS23240 at 5218.545 kb on + strand, within PFLU_RS23240 at 5218.545 kb on + strand, within PFLU_RS23240 at 5218.546 kb on - strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.547 kb on + strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.548 kb on - strand, within PFLU_RS23240 at 5218.554 kb on + strand, within PFLU_RS23240 at 5218.554 kb on + strand, within PFLU_RS23240 at 5218.554 kb on + strand, within PFLU_RS23240 at 5218.596 kb on - strand, within PFLU_RS23240 at 5218.596 kb on - strand, within PFLU_RS23240 at 5218.685 kb on - strand, within PFLU_RS23240 at 5218.685 kb on - strand, within PFLU_RS23240 at 5218.685 kb on - strand, within PFLU_RS23240 at 5218.685 kb on - strand, within PFLU_RS23240 at 5218.841 kb on - strand, within PFLU_RS23240 at 5219.010 kb on + strand, within PFLU_RS23240 at 5219.011 kb on - strand, within PFLU_RS23240 at 5219.011 kb on - strand, within PFLU_RS23240 at 5219.011 kb on - strand, within PFLU_RS23240 at 5219.011 kb on - strand, within PFLU_RS23240 at 5219.037 kb on + strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240 at 5219.038 kb on - strand, within PFLU_RS23240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 5,216,945 - +0.4 5,216,953 + +0.5 5,216,954 - +1.4 5,216,954 - -2.9 5,216,990 + -1.1 5,216,990 + -0.5 5,216,990 + +0.4 5,216,990 + -0.4 5,216,990 + +0.3 5,216,990 + -1.8 5,216,991 - +0.5 5,216,991 - -0.4 5,216,991 - +0.1 5,216,991 - +0.8 5,216,991 - +0.5 5,216,991 - -2.0 5,216,991 - +1.6 5,216,991 - -0.1 5,216,991 - +0.9 5,216,991 - +0.9 5,216,991 - +0.5 5,216,991 - -1.0 5,216,991 - +1.0 5,216,991 - -0.9 5,216,991 - -0.0 5,217,428 + -0.1 5,217,429 - +0.7 5,217,433 + -1.1 5,217,433 + -1.0 5,217,433 + -0.8 5,217,433 + +0.5 5,217,433 + +0.9 5,217,433 + -0.9 5,217,433 + -0.0 5,217,433 + +0.5 5,217,433 + +0.8 5,217,433 + -0.8 5,217,433 + +0.5 5,217,433 + +1.2 5,217,433 + -0.6 5,217,433 + -1.4 5,217,433 + -0.1 5,217,433 + -0.2 5,217,433 + +0.7 5,217,433 + -2.8 5,217,433 + -0.4 5,217,434 - +1.2 5,217,434 - +0.1 5,217,434 - -0.8 5,217,434 - -0.9 5,217,434 - +0.4 5,217,434 - +0.4 5,217,434 - +1.0 5,217,434 - +0.9 5,217,434 - -0.7 5,217,434 - +1.3 5,217,434 - +0.0 5,217,434 - -1.9 5,217,434 - +0.4 5,217,434 - -3.8 5,217,434 - -0.9 5,217,434 - -0.6 5,217,434 - +0.9 5,217,434 - -0.1 5,217,434 - -0.0 5,217,471 - -0.9 5,217,471 - +0.1 5,217,476 + +0.2 5,217,482 + +0.1 5,217,482 + -2.6 5,217,483 - -0.0 5,217,483 - +0.6 5,217,544 + PFLU_RS31780 0.11 +0.1 5,217,622 - PFLU_RS31780 0.45 +0.8 5,217,642 + PFLU_RS31780 0.54 -0.9 5,217,642 + PFLU_RS31780 0.54 +0.3 5,217,738 + -1.3 5,217,738 + +1.2 5,217,782 + +0.2 5,217,790 + -2.7 5,217,790 + -0.3 5,217,794 + -0.6 5,217,794 + +2.5 5,217,794 + -0.2 5,217,794 + -1.1 5,217,794 + +0.8 5,217,794 + -0.2 5,217,795 - -1.7 5,217,795 - +0.8 5,217,795 - -0.1 5,217,795 - -0.9 5,217,796 + -0.8 5,217,797 - +0.8 5,217,797 - -0.7 5,217,797 - -0.1 5,217,821 + -1.0 5,217,852 + PFLU_RS23235 0.17 -0.4 5,217,852 + PFLU_RS23235 0.17 +0.0 5,217,852 + PFLU_RS23235 0.17 +0.4 5,217,852 + PFLU_RS23235 0.17 -0.7 5,217,852 + PFLU_RS23235 0.17 +0.1 5,217,853 - PFLU_RS23235 0.17 +3.6 5,218,189 + +0.2 5,218,189 + -0.0 5,218,189 + -1.6 5,218,189 + -1.4 5,218,189 + +2.0 5,218,190 - +2.3 5,218,190 - -0.4 5,218,190 - -0.5 5,218,191 + +1.9 5,218,191 + +1.8 5,218,191 + +0.1 5,218,191 + +1.0 5,218,192 - +0.9 5,218,192 - -0.1 5,218,192 - -0.6 5,218,255 + PFLU_RS31785 0.27 -0.4 5,218,255 + PFLU_RS31785 0.27 +0.2 5,218,255 + PFLU_RS31785 0.27 -0.9 5,218,255 + PFLU_RS31785 0.27 -1.7 5,218,255 + PFLU_RS31785 0.27 +1.3 5,218,255 + PFLU_RS31785 0.27 +0.8 5,218,256 - PFLU_RS31785 0.27 -0.2 5,218,256 - PFLU_RS31785 0.27 +1.3 5,218,545 + PFLU_RS23240 0.14 -0.2 5,218,545 + PFLU_RS23240 0.14 -0.8 5,218,545 + PFLU_RS23240 0.14 -1.2 5,218,546 - PFLU_RS23240 0.14 -2.2 5,218,547 + PFLU_RS23240 0.14 -1.2 5,218,547 + PFLU_RS23240 0.14 -1.5 5,218,547 + PFLU_RS23240 0.14 -0.2 5,218,547 + PFLU_RS23240 0.14 -1.2 5,218,547 + PFLU_RS23240 0.14 -0.8 5,218,547 + PFLU_RS23240 0.14 -0.2 5,218,547 + PFLU_RS23240 0.14 -0.7 5,218,547 + PFLU_RS23240 0.14 -0.2 5,218,547 + PFLU_RS23240 0.14 +1.8 5,218,547 + PFLU_RS23240 0.14 -1.7 5,218,547 + PFLU_RS23240 0.14 -2.1 5,218,547 + PFLU_RS23240 0.14 -1.6 5,218,547 + PFLU_RS23240 0.14 -1.6 5,218,547 + PFLU_RS23240 0.14 -2.2 5,218,548 - PFLU_RS23240 0.14 +3.1 5,218,548 - PFLU_RS23240 0.14 -2.5 5,218,548 - PFLU_RS23240 0.14 +0.3 5,218,548 - PFLU_RS23240 0.14 +1.2 5,218,548 - PFLU_RS23240 0.14 +0.2 5,218,548 - PFLU_RS23240 0.14 -2.1 5,218,548 - PFLU_RS23240 0.14 -1.8 5,218,548 - PFLU_RS23240 0.14 -0.0 5,218,548 - PFLU_RS23240 0.14 +1.5 5,218,548 - PFLU_RS23240 0.14 +1.8 5,218,548 - PFLU_RS23240 0.14 -1.2 5,218,548 - PFLU_RS23240 0.14 +0.3 5,218,548 - PFLU_RS23240 0.14 -0.2 5,218,548 - PFLU_RS23240 0.14 -1.9 5,218,548 - PFLU_RS23240 0.14 -1.6 5,218,554 + PFLU_RS23240 0.15 +0.8 5,218,554 + PFLU_RS23240 0.15 -0.6 5,218,554 + PFLU_RS23240 0.15 -1.3 5,218,596 - PFLU_RS23240 0.18 -1.0 5,218,596 - PFLU_RS23240 0.18 +0.9 5,218,685 - PFLU_RS23240 0.24 +2.3 5,218,685 - PFLU_RS23240 0.24 -1.1 5,218,685 - PFLU_RS23240 0.24 -0.2 5,218,685 - PFLU_RS23240 0.24 +0.8 5,218,841 - PFLU_RS23240 0.35 +0.8 5,219,010 + PFLU_RS23240 0.46 -1.2 5,219,011 - PFLU_RS23240 0.47 -2.0 5,219,011 - PFLU_RS23240 0.47 +0.6 5,219,011 - PFLU_RS23240 0.47 -2.3 5,219,011 - PFLU_RS23240 0.47 -1.8 5,219,037 + PFLU_RS23240 0.48 -2.1 5,219,038 - PFLU_RS23240 0.48 -0.2 5,219,038 - PFLU_RS23240 0.48 +1.1 5,219,038 - PFLU_RS23240 0.48 -2.1 5,219,038 - PFLU_RS23240 0.48 -0.0 5,219,038 - PFLU_RS23240 0.48 +0.1 5,219,038 - PFLU_RS23240 0.48 -1.2
Or see this region's nucleotide sequence