Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21030

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS21025 and PFLU_RS21030 overlap by 50 nucleotidesPFLU_RS21030 and PFLU_RS21035 are separated by 157 nucleotides PFLU_RS21025: PFLU_RS21025 - MFS transporter, at 4,726,005 to 4,727,273 _RS21025 PFLU_RS21030: PFLU_RS21030 - DNA/RNA non-specific endonuclease, at 4,727,224 to 4,728,021 _RS21030 PFLU_RS21035: PFLU_RS21035 - SDR family oxidoreductase, at 4,728,179 to 4,729,240 _RS21035 Position (kb) 4727 4728 4729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4726.233 kb on + strand, within PFLU_RS21025at 4726.234 kb on - strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.338 kb on + strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.339 kb on - strand, within PFLU_RS21025at 4726.656 kb on + strand, within PFLU_RS21025at 4726.656 kb on + strand, within PFLU_RS21025at 4726.656 kb on + strand, within PFLU_RS21025at 4726.786 kb on - strand, within PFLU_RS21025at 4726.932 kb on + strand, within PFLU_RS21025at 4727.188 kb on - strandat 4727.188 kb on - strandat 4727.188 kb on - strandat 4727.189 kb on + strandat 4727.189 kb on + strandat 4727.300 kb on + strandat 4727.300 kb on + strandat 4727.300 kb on + strandat 4727.345 kb on + strand, within PFLU_RS21030at 4727.345 kb on + strand, within PFLU_RS21030at 4727.345 kb on + strand, within PFLU_RS21030at 4727.346 kb on - strand, within PFLU_RS21030at 4727.346 kb on - strand, within PFLU_RS21030at 4727.376 kb on - strand, within PFLU_RS21030at 4727.376 kb on - strand, within PFLU_RS21030at 4727.419 kb on - strand, within PFLU_RS21030at 4727.432 kb on + strand, within PFLU_RS21030at 4727.465 kb on + strand, within PFLU_RS21030at 4727.465 kb on + strand, within PFLU_RS21030at 4727.465 kb on + strand, within PFLU_RS21030at 4727.465 kb on + strand, within PFLU_RS21030at 4727.465 kb on + strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.466 kb on - strand, within PFLU_RS21030at 4727.801 kb on + strand, within PFLU_RS21030at 4727.802 kb on - strand, within PFLU_RS21030at 4727.936 kb on + strand, within PFLU_RS21030at 4727.937 kb on - strand, within PFLU_RS21030at 4727.937 kb on - strand, within PFLU_RS21030at 4727.963 kb on - strandat 4727.978 kb on - strandat 4728.013 kb on + strandat 4728.013 kb on + strandat 4728.014 kb on - strandat 4728.014 kb on - strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.017 kb on + strandat 4728.018 kb on - strandat 4728.018 kb on - strandat 4728.018 kb on - strandat 4728.018 kb on - strandat 4728.026 kb on + strandat 4728.026 kb on + strandat 4728.027 kb on - strandat 4728.027 kb on - strandat 4728.033 kb on + strandat 4728.033 kb on + strandat 4728.033 kb on + strandat 4728.077 kb on + strandat 4728.077 kb on + strandat 4728.078 kb on - strandat 4728.078 kb on - strandat 4728.078 kb on - strandat 4728.078 kb on - strandat 4728.121 kb on - strandat 4728.138 kb on - strandat 4728.159 kb on + strandat 4728.160 kb on - strandat 4728.160 kb on - strandat 4728.160 kb on - strandat 4728.160 kb on - strandat 4728.160 kb on - strandat 4728.178 kb on + strandat 4728.178 kb on + strandat 4728.179 kb on - strandat 4728.179 kb on - strandat 4728.241 kb on - strandat 4728.343 kb on - strand, within PFLU_RS21035at 4728.343 kb on - strand, within PFLU_RS21035at 4728.539 kb on + strand, within PFLU_RS21035at 4728.539 kb on + strand, within PFLU_RS21035at 4728.540 kb on - strand, within PFLU_RS21035at 4728.540 kb on - strand, within PFLU_RS21035at 4728.852 kb on + strand, within PFLU_RS21035at 4728.852 kb on + strand, within PFLU_RS21035at 4728.852 kb on + strand, within PFLU_RS21035at 4728.853 kb on - strand, within PFLU_RS21035at 4728.853 kb on - strand, within PFLU_RS21035at 4728.951 kb on - strand, within PFLU_RS21035

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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4,726,233 + PFLU_RS21025 0.18 -0.1
4,726,234 - PFLU_RS21025 0.18 -1.4
4,726,338 + PFLU_RS21025 0.26 -0.7
4,726,338 + PFLU_RS21025 0.26 +1.1
4,726,338 + PFLU_RS21025 0.26 +0.3
4,726,338 + PFLU_RS21025 0.26 +0.4
4,726,338 + PFLU_RS21025 0.26 -0.4
4,726,338 + PFLU_RS21025 0.26 -0.0
4,726,338 + PFLU_RS21025 0.26 -1.5
4,726,338 + PFLU_RS21025 0.26 +1.0
4,726,338 + PFLU_RS21025 0.26 -0.1
4,726,338 + PFLU_RS21025 0.26 +0.2
4,726,338 + PFLU_RS21025 0.26 -0.2
4,726,338 + PFLU_RS21025 0.26 +0.5
4,726,338 + PFLU_RS21025 0.26 +0.8
4,726,338 + PFLU_RS21025 0.26 +0.2
4,726,339 - PFLU_RS21025 0.26 -2.6
4,726,339 - PFLU_RS21025 0.26 +0.1
4,726,339 - PFLU_RS21025 0.26 +0.0
4,726,339 - PFLU_RS21025 0.26 -0.1
4,726,339 - PFLU_RS21025 0.26 -0.9
4,726,339 - PFLU_RS21025 0.26 -2.9
4,726,339 - PFLU_RS21025 0.26 +0.0
4,726,339 - PFLU_RS21025 0.26 -1.0
4,726,339 - PFLU_RS21025 0.26 -0.7
4,726,339 - PFLU_RS21025 0.26 +0.6
4,726,339 - PFLU_RS21025 0.26 +0.3
4,726,339 - PFLU_RS21025 0.26 -3.0
4,726,339 - PFLU_RS21025 0.26 -0.8
4,726,339 - PFLU_RS21025 0.26 +1.8
4,726,339 - PFLU_RS21025 0.26 +1.0
4,726,656 + PFLU_RS21025 0.51 +0.6
4,726,656 + PFLU_RS21025 0.51 +0.6
4,726,656 + PFLU_RS21025 0.51 -1.0
4,726,786 - PFLU_RS21025 0.62 +2.1
4,726,932 + PFLU_RS21025 0.73 -0.4
4,727,188 - +0.0
4,727,188 - -2.3
4,727,188 - -2.1
4,727,189 + +0.9
4,727,189 + +1.4
4,727,300 + +0.0
4,727,300 + -0.4
4,727,300 + -1.2
4,727,345 + PFLU_RS21030 0.15 +0.5
4,727,345 + PFLU_RS21030 0.15 -0.3
4,727,345 + PFLU_RS21030 0.15 +0.7
4,727,346 - PFLU_RS21030 0.15 -2.1
4,727,346 - PFLU_RS21030 0.15 -1.0
4,727,376 - PFLU_RS21030 0.19 -0.8
4,727,376 - PFLU_RS21030 0.19 -1.3
4,727,419 - PFLU_RS21030 0.24 -0.1
4,727,432 + PFLU_RS21030 0.26 +0.4
4,727,465 + PFLU_RS21030 0.30 +1.1
4,727,465 + PFLU_RS21030 0.30 +0.4
4,727,465 + PFLU_RS21030 0.30 -2.7
4,727,465 + PFLU_RS21030 0.30 +1.3
4,727,465 + PFLU_RS21030 0.30 +1.8
4,727,466 - PFLU_RS21030 0.30 +1.0
4,727,466 - PFLU_RS21030 0.30 +0.0
4,727,466 - PFLU_RS21030 0.30 +0.7
4,727,466 - PFLU_RS21030 0.30 +1.1
4,727,466 - PFLU_RS21030 0.30 -0.3
4,727,466 - PFLU_RS21030 0.30 +1.0
4,727,801 + PFLU_RS21030 0.72 -0.0
4,727,802 - PFLU_RS21030 0.72 -0.7
4,727,936 + PFLU_RS21030 0.89 +1.6
4,727,937 - PFLU_RS21030 0.89 -0.2
4,727,937 - PFLU_RS21030 0.89 -1.2
4,727,963 - +0.1
4,727,978 - -0.0
4,728,013 + +1.4
4,728,013 + +0.1
4,728,014 - +1.8
4,728,014 - +1.9
4,728,017 + +0.2
4,728,017 + -1.2
4,728,017 + +0.8
4,728,017 + -0.7
4,728,017 + +0.2
4,728,017 + -0.9
4,728,017 + -0.4
4,728,017 + +1.4
4,728,017 + +0.1
4,728,017 + -0.4
4,728,018 - -1.2
4,728,018 - +0.0
4,728,018 - -0.4
4,728,018 - -0.2
4,728,026 + +1.0
4,728,026 + -0.4
4,728,027 - -0.3
4,728,027 - +1.4
4,728,033 + +0.6
4,728,033 + -0.3
4,728,033 + -1.1
4,728,077 + +0.2
4,728,077 + -1.6
4,728,078 - -0.2
4,728,078 - +1.1
4,728,078 - +1.5
4,728,078 - +1.1
4,728,121 - +0.2
4,728,138 - -0.4
4,728,159 + -1.2
4,728,160 - +0.6
4,728,160 - +0.5
4,728,160 - +1.5
4,728,160 - -1.0
4,728,160 - -0.2
4,728,178 + +0.6
4,728,178 + +0.6
4,728,179 - -0.5
4,728,179 - +0.3
4,728,241 - -1.8
4,728,343 - PFLU_RS21035 0.15 -0.2
4,728,343 - PFLU_RS21035 0.15 +1.0
4,728,539 + PFLU_RS21035 0.34 -0.7
4,728,539 + PFLU_RS21035 0.34 +0.9
4,728,540 - PFLU_RS21035 0.34 +1.9
4,728,540 - PFLU_RS21035 0.34 -1.4
4,728,852 + PFLU_RS21035 0.63 +0.4
4,728,852 + PFLU_RS21035 0.63 -0.6
4,728,852 + PFLU_RS21035 0.63 -1.0
4,728,853 - PFLU_RS21035 0.63 +1.7
4,728,853 - PFLU_RS21035 0.63 +0.4
4,728,951 - PFLU_RS21035 0.73 +1.0

Or see this region's nucleotide sequence