Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04275

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04270 and PFLU_RS04275 are separated by 107 nucleotidesPFLU_RS04275 and PFLU_RS04280 overlap by 4 nucleotides PFLU_RS04270: PFLU_RS04270 - AEC family transporter, at 965,631 to 966,572 _RS04270 PFLU_RS04275: PFLU_RS04275 - 4-carboxymuconolactone decarboxylase, at 966,680 to 967,063 _RS04275 PFLU_RS04280: PFLU_RS04280 - calcium/sodium antiporter, at 967,060 to 968,106 _RS04280 Position (kb) 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 965.736 kb on - strand, within PFLU_RS04270at 965.736 kb on - strand, within PFLU_RS04270at 965.844 kb on + strand, within PFLU_RS04270at 965.844 kb on + strand, within PFLU_RS04270at 965.844 kb on + strand, within PFLU_RS04270at 965.844 kb on + strand, within PFLU_RS04270at 965.844 kb on + strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.845 kb on - strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.928 kb on + strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.929 kb on - strand, within PFLU_RS04270at 965.930 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.987 kb on + strand, within PFLU_RS04270at 965.988 kb on - strand, within PFLU_RS04270at 965.988 kb on - strand, within PFLU_RS04270at 965.988 kb on - strand, within PFLU_RS04270at 965.988 kb on - strand, within PFLU_RS04270at 965.988 kb on - strand, within PFLU_RS04270at 965.991 kb on + strand, within PFLU_RS04270at 965.991 kb on + strand, within PFLU_RS04270at 965.991 kb on + strand, within PFLU_RS04270at 965.991 kb on + strand, within PFLU_RS04270at 965.992 kb on - strand, within PFLU_RS04270at 965.992 kb on - strand, within PFLU_RS04270at 965.992 kb on - strand, within PFLU_RS04270at 965.992 kb on - strand, within PFLU_RS04270at 966.001 kb on - strand, within PFLU_RS04270at 966.005 kb on + strand, within PFLU_RS04270at 966.005 kb on + strand, within PFLU_RS04270at 966.005 kb on + strand, within PFLU_RS04270at 966.006 kb on - strand, within PFLU_RS04270at 966.006 kb on - strand, within PFLU_RS04270at 966.006 kb on - strand, within PFLU_RS04270at 966.006 kb on - strand, within PFLU_RS04270at 966.006 kb on - strand, within PFLU_RS04270at 966.048 kb on + strand, within PFLU_RS04270at 966.048 kb on + strand, within PFLU_RS04270at 966.048 kb on + strand, within PFLU_RS04270at 966.048 kb on + strand, within PFLU_RS04270at 966.048 kb on + strand, within PFLU_RS04270at 966.049 kb on - strand, within PFLU_RS04270at 966.049 kb on - strand, within PFLU_RS04270at 966.049 kb on - strand, within PFLU_RS04270at 966.049 kb on - strand, within PFLU_RS04270at 966.081 kb on + strand, within PFLU_RS04270at 966.081 kb on + strand, within PFLU_RS04270at 966.082 kb on - strand, within PFLU_RS04270at 966.082 kb on - strand, within PFLU_RS04270at 966.177 kb on + strand, within PFLU_RS04270at 966.177 kb on + strand, within PFLU_RS04270at 966.222 kb on + strand, within PFLU_RS04270at 966.414 kb on + strand, within PFLU_RS04270at 966.414 kb on + strand, within PFLU_RS04270at 966.415 kb on - strand, within PFLU_RS04270at 966.415 kb on - strand, within PFLU_RS04270at 966.495 kb on - strandat 966.670 kb on + strandat 966.699 kb on + strandat 966.700 kb on - strandat 966.700 kb on - strandat 966.759 kb on + strand, within PFLU_RS04275at 966.759 kb on + strand, within PFLU_RS04275at 966.759 kb on + strand, within PFLU_RS04275at 966.760 kb on - strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.007 kb on + strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.008 kb on - strand, within PFLU_RS04275at 967.142 kb on + strandat 967.142 kb on + strandat 967.142 kb on + strandat 967.142 kb on + strandat 967.142 kb on + strandat 967.142 kb on + strandat 967.142 kb on + strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.143 kb on - strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.145 kb on + strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.146 kb on - strandat 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.201 kb on + strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.202 kb on - strand, within PFLU_RS04280at 967.214 kb on + strand, within PFLU_RS04280at 967.214 kb on + strand, within PFLU_RS04280at 967.215 kb on - strand, within PFLU_RS04280at 967.215 kb on - strand, within PFLU_RS04280at 967.223 kb on + strand, within PFLU_RS04280at 967.223 kb on + strand, within PFLU_RS04280at 967.223 kb on + strand, within PFLU_RS04280at 967.224 kb on - strand, within PFLU_RS04280at 967.224 kb on - strand, within PFLU_RS04280at 967.224 kb on - strand, within PFLU_RS04280at 967.274 kb on + strand, within PFLU_RS04280at 967.274 kb on + strand, within PFLU_RS04280at 967.275 kb on - strand, within PFLU_RS04280at 967.275 kb on - strand, within PFLU_RS04280at 967.275 kb on - strand, within PFLU_RS04280at 967.275 kb on - strand, within PFLU_RS04280at 967.695 kb on - strand, within PFLU_RS04280at 967.826 kb on - strand, within PFLU_RS04280at 967.826 kb on - strand, within PFLU_RS04280at 967.879 kb on + strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 967.880 kb on - strand, within PFLU_RS04280at 968.047 kb on + strandat 968.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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965,736 - PFLU_RS04270 0.11 +0.8
965,736 - PFLU_RS04270 0.11 +1.1
965,844 + PFLU_RS04270 0.23 +0.3
965,844 + PFLU_RS04270 0.23 +0.7
965,844 + PFLU_RS04270 0.23 -0.9
965,844 + PFLU_RS04270 0.23 -2.0
965,844 + PFLU_RS04270 0.23 +0.0
965,845 - PFLU_RS04270 0.23 -1.0
965,845 - PFLU_RS04270 0.23 +0.7
965,845 - PFLU_RS04270 0.23 -0.4
965,845 - PFLU_RS04270 0.23 +1.1
965,845 - PFLU_RS04270 0.23 -0.3
965,845 - PFLU_RS04270 0.23 +1.0
965,845 - PFLU_RS04270 0.23 -0.4
965,845 - PFLU_RS04270 0.23 +0.2
965,928 + PFLU_RS04270 0.32 -0.0
965,928 + PFLU_RS04270 0.32 +1.1
965,928 + PFLU_RS04270 0.32 -1.4
965,928 + PFLU_RS04270 0.32 -1.1
965,928 + PFLU_RS04270 0.32 -0.1
965,928 + PFLU_RS04270 0.32 +0.6
965,928 + PFLU_RS04270 0.32 +0.3
965,928 + PFLU_RS04270 0.32 -1.4
965,928 + PFLU_RS04270 0.32 +0.5
965,928 + PFLU_RS04270 0.32 -1.0
965,928 + PFLU_RS04270 0.32 -1.2
965,928 + PFLU_RS04270 0.32 -1.6
965,928 + PFLU_RS04270 0.32 +1.0
965,928 + PFLU_RS04270 0.32 -1.9
965,928 + PFLU_RS04270 0.32 +0.4
965,928 + PFLU_RS04270 0.32 -1.8
965,928 + PFLU_RS04270 0.32 -0.1
965,929 - PFLU_RS04270 0.32 +2.6
965,929 - PFLU_RS04270 0.32 -0.2
965,929 - PFLU_RS04270 0.32 +1.3
965,929 - PFLU_RS04270 0.32 -3.1
965,929 - PFLU_RS04270 0.32 -0.6
965,929 - PFLU_RS04270 0.32 +1.3
965,929 - PFLU_RS04270 0.32 -1.1
965,929 - PFLU_RS04270 0.32 -1.8
965,929 - PFLU_RS04270 0.32 -0.3
965,930 + PFLU_RS04270 0.32 -1.3
965,987 + PFLU_RS04270 0.38 +0.5
965,987 + PFLU_RS04270 0.38 +0.4
965,987 + PFLU_RS04270 0.38 -0.6
965,987 + PFLU_RS04270 0.38 +0.6
965,987 + PFLU_RS04270 0.38 +1.3
965,987 + PFLU_RS04270 0.38 +0.4
965,987 + PFLU_RS04270 0.38 +0.5
965,987 + PFLU_RS04270 0.38 +0.8
965,987 + PFLU_RS04270 0.38 -0.5
965,987 + PFLU_RS04270 0.38 -1.1
965,988 - PFLU_RS04270 0.38 -0.4
965,988 - PFLU_RS04270 0.38 +1.1
965,988 - PFLU_RS04270 0.38 -0.6
965,988 - PFLU_RS04270 0.38 +0.8
965,988 - PFLU_RS04270 0.38 -1.2
965,991 + PFLU_RS04270 0.38 -1.5
965,991 + PFLU_RS04270 0.38 +0.6
965,991 + PFLU_RS04270 0.38 +0.4
965,991 + PFLU_RS04270 0.38 +0.5
965,992 - PFLU_RS04270 0.38 +0.4
965,992 - PFLU_RS04270 0.38 +0.2
965,992 - PFLU_RS04270 0.38 +0.4
965,992 - PFLU_RS04270 0.38 -2.0
966,001 - PFLU_RS04270 0.39 +1.0
966,005 + PFLU_RS04270 0.40 +0.8
966,005 + PFLU_RS04270 0.40 +0.6
966,005 + PFLU_RS04270 0.40 -0.6
966,006 - PFLU_RS04270 0.40 +1.3
966,006 - PFLU_RS04270 0.40 -0.9
966,006 - PFLU_RS04270 0.40 -2.3
966,006 - PFLU_RS04270 0.40 +0.4
966,006 - PFLU_RS04270 0.40 +0.5
966,048 + PFLU_RS04270 0.44 -0.5
966,048 + PFLU_RS04270 0.44 -0.6
966,048 + PFLU_RS04270 0.44 -0.6
966,048 + PFLU_RS04270 0.44 +0.8
966,048 + PFLU_RS04270 0.44 +1.2
966,049 - PFLU_RS04270 0.44 +1.4
966,049 - PFLU_RS04270 0.44 -1.4
966,049 - PFLU_RS04270 0.44 -0.3
966,049 - PFLU_RS04270 0.44 +1.0
966,081 + PFLU_RS04270 0.48 -0.3
966,081 + PFLU_RS04270 0.48 +1.6
966,082 - PFLU_RS04270 0.48 -1.7
966,082 - PFLU_RS04270 0.48 -1.0
966,177 + PFLU_RS04270 0.58 -0.1
966,177 + PFLU_RS04270 0.58 -1.4
966,222 + PFLU_RS04270 0.63 +1.1
966,414 + PFLU_RS04270 0.83 +1.1
966,414 + PFLU_RS04270 0.83 -1.1
966,415 - PFLU_RS04270 0.83 -0.3
966,415 - PFLU_RS04270 0.83 +0.2
966,495 - +0.2
966,670 + -0.2
966,699 + +0.1
966,700 - +0.6
966,700 - -0.3
966,759 + PFLU_RS04275 0.21 -1.3
966,759 + PFLU_RS04275 0.21 +1.2
966,759 + PFLU_RS04275 0.21 +0.6
966,760 - PFLU_RS04275 0.21 -0.0
967,007 + PFLU_RS04275 0.85 +0.2
967,007 + PFLU_RS04275 0.85 -1.4
967,007 + PFLU_RS04275 0.85 -1.8
967,007 + PFLU_RS04275 0.85 -0.0
967,007 + PFLU_RS04275 0.85 +0.3
967,007 + PFLU_RS04275 0.85 +1.1
967,007 + PFLU_RS04275 0.85 +0.7
967,007 + PFLU_RS04275 0.85 -2.1
967,007 + PFLU_RS04275 0.85 +0.3
967,007 + PFLU_RS04275 0.85 +1.1
967,007 + PFLU_RS04275 0.85 +0.4
967,007 + PFLU_RS04275 0.85 -0.8
967,007 + PFLU_RS04275 0.85 -0.9
967,007 + PFLU_RS04275 0.85 +0.2
967,008 - PFLU_RS04275 0.85 +0.2
967,008 - PFLU_RS04275 0.85 +0.7
967,008 - PFLU_RS04275 0.85 -0.0
967,008 - PFLU_RS04275 0.85 +0.1
967,008 - PFLU_RS04275 0.85 -1.3
967,008 - PFLU_RS04275 0.85 +0.2
967,008 - PFLU_RS04275 0.85 +0.5
967,008 - PFLU_RS04275 0.85 +0.3
967,008 - PFLU_RS04275 0.85 -0.3
967,008 - PFLU_RS04275 0.85 +0.5
967,008 - PFLU_RS04275 0.85 +1.0
967,008 - PFLU_RS04275 0.85 +0.3
967,008 - PFLU_RS04275 0.85 +0.9
967,008 - PFLU_RS04275 0.85 +0.8
967,008 - PFLU_RS04275 0.85 +0.8
967,008 - PFLU_RS04275 0.85 +0.8
967,142 + +0.7
967,142 + +0.7
967,142 + -0.4
967,142 + -0.1
967,142 + +1.1
967,142 + -0.4
967,142 + +1.1
967,143 - -0.1
967,143 - +0.2
967,143 - +0.4
967,143 - +0.2
967,143 - -1.4
967,143 - +1.1
967,143 - +0.7
967,143 - +1.6
967,143 - +0.7
967,145 + +0.0
967,145 + +0.6
967,145 + -1.1
967,145 + +0.4
967,145 + -0.6
967,145 + -0.5
967,145 + -0.4
967,145 + -0.5
967,145 + +0.9
967,145 + +0.4
967,146 - +0.2
967,146 - -0.7
967,146 - -1.9
967,146 - +1.4
967,146 - -0.4
967,146 - +2.6
967,146 - -1.0
967,201 + PFLU_RS04280 0.13 -1.5
967,201 + PFLU_RS04280 0.13 +1.1
967,201 + PFLU_RS04280 0.13 +1.3
967,201 + PFLU_RS04280 0.13 +1.3
967,201 + PFLU_RS04280 0.13 -1.7
967,201 + PFLU_RS04280 0.13 +1.2
967,201 + PFLU_RS04280 0.13 +0.3
967,201 + PFLU_RS04280 0.13 +0.5
967,201 + PFLU_RS04280 0.13 +0.2
967,201 + PFLU_RS04280 0.13 -1.7
967,201 + PFLU_RS04280 0.13 -0.0
967,201 + PFLU_RS04280 0.13 -0.8
967,201 + PFLU_RS04280 0.13 -0.3
967,201 + PFLU_RS04280 0.13 -0.4
967,201 + PFLU_RS04280 0.13 +0.7
967,202 - PFLU_RS04280 0.14 -0.8
967,202 - PFLU_RS04280 0.14 +0.2
967,202 - PFLU_RS04280 0.14 -0.8
967,202 - PFLU_RS04280 0.14 -1.0
967,202 - PFLU_RS04280 0.14 -0.2
967,202 - PFLU_RS04280 0.14 +0.5
967,202 - PFLU_RS04280 0.14 +2.0
967,202 - PFLU_RS04280 0.14 +0.7
967,202 - PFLU_RS04280 0.14 +1.0
967,202 - PFLU_RS04280 0.14 +0.4
967,202 - PFLU_RS04280 0.14 -1.6
967,202 - PFLU_RS04280 0.14 +0.4
967,214 + PFLU_RS04280 0.15 -1.6
967,214 + PFLU_RS04280 0.15 +1.5
967,215 - PFLU_RS04280 0.15 -0.2
967,215 - PFLU_RS04280 0.15 -1.1
967,223 + PFLU_RS04280 0.16 +0.6
967,223 + PFLU_RS04280 0.16 +0.4
967,223 + PFLU_RS04280 0.16 -1.4
967,224 - PFLU_RS04280 0.16 -0.5
967,224 - PFLU_RS04280 0.16 -1.7
967,224 - PFLU_RS04280 0.16 +1.3
967,274 + PFLU_RS04280 0.20 -0.9
967,274 + PFLU_RS04280 0.20 -0.7
967,275 - PFLU_RS04280 0.21 +1.2
967,275 - PFLU_RS04280 0.21 +1.1
967,275 - PFLU_RS04280 0.21 +0.5
967,275 - PFLU_RS04280 0.21 +1.2
967,695 - PFLU_RS04280 0.61 -1.4
967,826 - PFLU_RS04280 0.73 -2.3
967,826 - PFLU_RS04280 0.73 +1.3
967,879 + PFLU_RS04280 0.78 -0.0
967,880 - PFLU_RS04280 0.78 +0.2
967,880 - PFLU_RS04280 0.78 -0.1
967,880 - PFLU_RS04280 0.78 +0.8
967,880 - PFLU_RS04280 0.78 -0.8
967,880 - PFLU_RS04280 0.78 +1.1
967,880 - PFLU_RS04280 0.78 +0.4
968,047 + -0.4
968,048 - +1.3

Or see this region's nucleotide sequence