Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00630 and PFLU_RS00635 are separated by 311 nucleotides PFLU_RS00635 and PFLU_RS00640 are separated by 14 nucleotides
PFLU_RS00630: PFLU_RS00630 - GntR family transcriptional regulator, at 133,465 to 134,163
_RS00630
PFLU_RS00635: PFLU_RS00635 - TauD/TfdA family dioxygenase, at 134,475 to 135,368
_RS00635
PFLU_RS00640: PFLU_RS00640 - ABC transporter substrate-binding protein, at 135,383 to 136,408
_RS00640
Position (kb) 134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 133.496 kb on + strand at 133.497 kb on - strand at 133.497 kb on - strand at 133.497 kb on - strand at 133.497 kb on - strand at 133.760 kb on + strand, within PFLU_RS00630 at 133.760 kb on + strand, within PFLU_RS00630 at 133.760 kb on + strand, within PFLU_RS00630 at 133.761 kb on - strand, within PFLU_RS00630 at 133.761 kb on - strand, within PFLU_RS00630 at 133.761 kb on - strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.790 kb on + strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.791 kb on - strand, within PFLU_RS00630 at 133.795 kb on - strand, within PFLU_RS00630 at 133.795 kb on - strand, within PFLU_RS00630 at 133.795 kb on - strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.877 kb on + strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 133.878 kb on - strand, within PFLU_RS00630 at 134.037 kb on + strand, within PFLU_RS00630 at 134.089 kb on + strand, within PFLU_RS00630 at 134.090 kb on - strand, within PFLU_RS00630 at 134.090 kb on - strand, within PFLU_RS00630 at 134.167 kb on + strand at 134.172 kb on + strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.182 kb on - strand at 134.182 kb on - strand at 134.184 kb on + strand at 134.184 kb on + strand at 134.184 kb on + strand at 134.184 kb on + strand at 134.185 kb on - strand at 134.185 kb on - strand at 134.185 kb on - strand at 134.185 kb on - strand at 134.185 kb on - strand at 134.219 kb on + strand at 134.219 kb on + strand at 134.219 kb on + strand at 134.220 kb on - strand at 134.220 kb on - strand at 134.220 kb on - strand at 134.220 kb on - strand at 134.220 kb on - strand at 134.265 kb on + strand at 134.265 kb on + strand at 134.265 kb on + strand at 134.265 kb on + strand at 134.265 kb on + strand at 134.266 kb on - strand at 134.266 kb on - strand at 134.266 kb on - strand at 134.318 kb on + strand at 134.318 kb on + strand at 134.318 kb on + strand at 134.319 kb on - strand at 134.346 kb on + strand at 134.346 kb on + strand at 134.347 kb on - strand at 134.347 kb on - strand at 134.347 kb on - strand at 134.397 kb on + strand at 134.398 kb on - strand at 134.432 kb on + strand at 134.433 kb on - strand at 134.433 kb on - strand at 134.439 kb on - strand at 134.490 kb on - strand at 134.490 kb on - strand at 134.490 kb on - strand at 134.841 kb on + strand, within PFLU_RS00635 at 134.841 kb on + strand, within PFLU_RS00635 at 134.841 kb on + strand, within PFLU_RS00635 at 134.841 kb on + strand, within PFLU_RS00635 at 134.841 kb on + strand, within PFLU_RS00635 at 134.842 kb on - strand, within PFLU_RS00635 at 134.842 kb on - strand, within PFLU_RS00635 at 134.843 kb on + strand, within PFLU_RS00635 at 134.844 kb on - strand, within PFLU_RS00635 at 134.844 kb on - strand, within PFLU_RS00635 at 134.994 kb on + strand, within PFLU_RS00635 at 134.994 kb on + strand, within PFLU_RS00635 at 134.994 kb on + strand, within PFLU_RS00635 at 134.994 kb on + strand, within PFLU_RS00635 at 134.994 kb on + strand, within PFLU_RS00635 at 134.995 kb on - strand, within PFLU_RS00635 at 134.995 kb on - strand, within PFLU_RS00635 at 135.204 kb on + strand, within PFLU_RS00635 at 135.205 kb on - strand, within PFLU_RS00635 at 135.205 kb on - strand, within PFLU_RS00635 at 135.205 kb on - strand, within PFLU_RS00635 at 135.234 kb on + strand, within PFLU_RS00635 at 135.235 kb on - strand, within PFLU_RS00635 at 135.235 kb on - strand, within PFLU_RS00635 at 135.235 kb on - strand, within PFLU_RS00635 at 135.338 kb on + strand at 135.338 kb on + strand at 135.434 kb on - strand at 135.521 kb on + strand, within PFLU_RS00640 at 135.521 kb on + strand, within PFLU_RS00640 at 135.521 kb on + strand, within PFLU_RS00640 at 135.522 kb on - strand, within PFLU_RS00640 at 135.522 kb on - strand, within PFLU_RS00640 at 135.522 kb on - strand, within PFLU_RS00640 at 135.528 kb on + strand, within PFLU_RS00640 at 135.567 kb on - strand, within PFLU_RS00640 at 135.758 kb on + strand, within PFLU_RS00640 at 135.759 kb on - strand, within PFLU_RS00640 at 135.759 kb on - strand, within PFLU_RS00640 at 135.761 kb on + strand, within PFLU_RS00640 at 135.761 kb on + strand, within PFLU_RS00640 at 135.761 kb on + strand, within PFLU_RS00640 at 135.761 kb on + strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.762 kb on - strand, within PFLU_RS00640 at 135.870 kb on - strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.920 kb on + strand, within PFLU_RS00640 at 135.921 kb on - strand, within PFLU_RS00640 at 135.921 kb on - strand, within PFLU_RS00640 at 135.921 kb on - strand, within PFLU_RS00640 at 135.921 kb on - strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.058 kb on + strand, within PFLU_RS00640 at 136.059 kb on - strand, within PFLU_RS00640 at 136.059 kb on - strand, within PFLU_RS00640 at 136.059 kb on - strand, within PFLU_RS00640 at 136.059 kb on - strand, within PFLU_RS00640 at 136.059 kb on - strand, within PFLU_RS00640 at 136.133 kb on + strand, within PFLU_RS00640 at 136.133 kb on + strand, within PFLU_RS00640 at 136.133 kb on + strand, within PFLU_RS00640 at 136.133 kb on + strand, within PFLU_RS00640 at 136.134 kb on - strand, within PFLU_RS00640 at 136.134 kb on - strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.208 kb on + strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.209 kb on - strand, within PFLU_RS00640 at 136.304 kb on + strand, within PFLU_RS00640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 133,496 + +0.4 133,497 - +0.9 133,497 - +0.2 133,497 - -3.5 133,497 - +0.9 133,760 + PFLU_RS00630 0.42 +0.7 133,760 + PFLU_RS00630 0.42 +0.4 133,760 + PFLU_RS00630 0.42 +1.0 133,761 - PFLU_RS00630 0.42 +0.2 133,761 - PFLU_RS00630 0.42 +1.1 133,761 - PFLU_RS00630 0.42 -0.6 133,790 + PFLU_RS00630 0.46 +0.4 133,790 + PFLU_RS00630 0.46 -0.0 133,790 + PFLU_RS00630 0.46 -0.9 133,790 + PFLU_RS00630 0.46 +0.1 133,790 + PFLU_RS00630 0.46 +0.1 133,790 + PFLU_RS00630 0.46 -0.3 133,790 + PFLU_RS00630 0.46 -1.6 133,790 + PFLU_RS00630 0.46 +0.2 133,790 + PFLU_RS00630 0.46 -0.3 133,791 - PFLU_RS00630 0.47 +0.1 133,791 - PFLU_RS00630 0.47 -1.0 133,791 - PFLU_RS00630 0.47 -0.1 133,791 - PFLU_RS00630 0.47 -1.0 133,791 - PFLU_RS00630 0.47 +0.6 133,791 - PFLU_RS00630 0.47 -1.0 133,791 - PFLU_RS00630 0.47 -0.6 133,791 - PFLU_RS00630 0.47 +0.3 133,791 - PFLU_RS00630 0.47 -1.4 133,791 - PFLU_RS00630 0.47 -1.6 133,791 - PFLU_RS00630 0.47 -2.2 133,791 - PFLU_RS00630 0.47 +0.1 133,795 - PFLU_RS00630 0.47 -1.1 133,795 - PFLU_RS00630 0.47 -0.3 133,795 - PFLU_RS00630 0.47 -0.4 133,877 + PFLU_RS00630 0.59 -1.4 133,877 + PFLU_RS00630 0.59 +0.2 133,877 + PFLU_RS00630 0.59 +0.8 133,877 + PFLU_RS00630 0.59 -0.9 133,877 + PFLU_RS00630 0.59 +0.0 133,877 + PFLU_RS00630 0.59 -0.8 133,877 + PFLU_RS00630 0.59 -0.3 133,877 + PFLU_RS00630 0.59 -0.6 133,877 + PFLU_RS00630 0.59 -2.3 133,878 - PFLU_RS00630 0.59 +0.7 133,878 - PFLU_RS00630 0.59 +2.3 133,878 - PFLU_RS00630 0.59 +0.3 133,878 - PFLU_RS00630 0.59 -0.4 133,878 - PFLU_RS00630 0.59 +1.5 133,878 - PFLU_RS00630 0.59 +0.9 133,878 - PFLU_RS00630 0.59 +1.3 133,878 - PFLU_RS00630 0.59 +1.0 133,878 - PFLU_RS00630 0.59 +0.5 133,878 - PFLU_RS00630 0.59 +0.4 133,878 - PFLU_RS00630 0.59 +0.5 133,878 - PFLU_RS00630 0.59 -0.0 134,037 + PFLU_RS00630 0.82 +0.1 134,089 + PFLU_RS00630 0.89 +0.8 134,090 - PFLU_RS00630 0.89 -0.3 134,090 - PFLU_RS00630 0.89 -0.4 134,167 + -0.5 134,172 + +0.3 134,181 + +0.8 134,181 + -0.5 134,181 + -2.1 134,181 + +0.1 134,182 - +0.0 134,182 - -2.1 134,184 + +1.3 134,184 + +0.4 134,184 + +0.4 134,184 + -0.3 134,185 - -0.3 134,185 - +0.2 134,185 - +0.5 134,185 - -0.9 134,185 - -0.6 134,219 + +0.5 134,219 + +0.3 134,219 + -1.4 134,220 - +0.0 134,220 - -1.6 134,220 - +0.9 134,220 - -1.3 134,220 - +0.6 134,265 + +0.8 134,265 + -0.0 134,265 + -1.8 134,265 + +1.3 134,265 + +1.2 134,266 - +3.6 134,266 - +0.7 134,266 - -0.5 134,318 + -0.6 134,318 + -1.6 134,318 + -2.6 134,319 - +1.1 134,346 + -0.1 134,346 + -0.1 134,347 - +0.3 134,347 - +0.8 134,347 - +0.6 134,397 + +1.3 134,398 - -0.5 134,432 + +0.1 134,433 - -0.1 134,433 - +0.6 134,439 - +0.2 134,490 - +0.2 134,490 - -1.8 134,490 - -1.4 134,841 + PFLU_RS00635 0.41 -0.9 134,841 + PFLU_RS00635 0.41 +0.7 134,841 + PFLU_RS00635 0.41 +0.6 134,841 + PFLU_RS00635 0.41 -0.9 134,841 + PFLU_RS00635 0.41 -0.1 134,842 - PFLU_RS00635 0.41 -0.5 134,842 - PFLU_RS00635 0.41 +0.5 134,843 + PFLU_RS00635 0.41 -1.8 134,844 - PFLU_RS00635 0.41 +0.2 134,844 - PFLU_RS00635 0.41 -0.5 134,994 + PFLU_RS00635 0.58 -0.2 134,994 + PFLU_RS00635 0.58 +0.2 134,994 + PFLU_RS00635 0.58 -1.3 134,994 + PFLU_RS00635 0.58 -1.6 134,994 + PFLU_RS00635 0.58 +0.3 134,995 - PFLU_RS00635 0.58 -0.6 134,995 - PFLU_RS00635 0.58 -0.2 135,204 + PFLU_RS00635 0.82 +1.7 135,205 - PFLU_RS00635 0.82 -0.7 135,205 - PFLU_RS00635 0.82 -0.8 135,205 - PFLU_RS00635 0.82 +0.4 135,234 + PFLU_RS00635 0.85 +1.7 135,235 - PFLU_RS00635 0.85 -0.7 135,235 - PFLU_RS00635 0.85 -0.4 135,235 - PFLU_RS00635 0.85 -0.8 135,338 + +0.3 135,338 + -0.9 135,434 - -0.3 135,521 + PFLU_RS00640 0.13 +0.1 135,521 + PFLU_RS00640 0.13 +0.6 135,521 + PFLU_RS00640 0.13 +0.5 135,522 - PFLU_RS00640 0.14 -0.2 135,522 - PFLU_RS00640 0.14 -2.1 135,522 - PFLU_RS00640 0.14 -2.8 135,528 + PFLU_RS00640 0.14 -2.0 135,567 - PFLU_RS00640 0.18 +1.4 135,758 + PFLU_RS00640 0.37 +1.4 135,759 - PFLU_RS00640 0.37 +0.7 135,759 - PFLU_RS00640 0.37 +0.7 135,761 + PFLU_RS00640 0.37 +0.3 135,761 + PFLU_RS00640 0.37 +1.7 135,761 + PFLU_RS00640 0.37 -0.2 135,761 + PFLU_RS00640 0.37 -2.8 135,762 - PFLU_RS00640 0.37 -0.4 135,762 - PFLU_RS00640 0.37 +0.8 135,762 - PFLU_RS00640 0.37 +0.2 135,762 - PFLU_RS00640 0.37 -0.7 135,762 - PFLU_RS00640 0.37 +0.7 135,762 - PFLU_RS00640 0.37 -1.1 135,870 - PFLU_RS00640 0.47 +0.4 135,920 + PFLU_RS00640 0.52 -0.5 135,920 + PFLU_RS00640 0.52 -0.9 135,920 + PFLU_RS00640 0.52 +1.0 135,920 + PFLU_RS00640 0.52 -0.8 135,920 + PFLU_RS00640 0.52 -2.5 135,920 + PFLU_RS00640 0.52 +0.7 135,921 - PFLU_RS00640 0.52 -0.8 135,921 - PFLU_RS00640 0.52 -0.2 135,921 - PFLU_RS00640 0.52 +0.7 135,921 - PFLU_RS00640 0.52 -2.0 136,058 + PFLU_RS00640 0.66 +0.5 136,058 + PFLU_RS00640 0.66 +1.0 136,058 + PFLU_RS00640 0.66 -0.9 136,058 + PFLU_RS00640 0.66 +0.6 136,058 + PFLU_RS00640 0.66 +0.6 136,058 + PFLU_RS00640 0.66 +0.4 136,059 - PFLU_RS00640 0.66 +1.2 136,059 - PFLU_RS00640 0.66 +0.9 136,059 - PFLU_RS00640 0.66 -0.2 136,059 - PFLU_RS00640 0.66 -0.5 136,059 - PFLU_RS00640 0.66 -0.2 136,133 + PFLU_RS00640 0.73 +1.9 136,133 + PFLU_RS00640 0.73 +0.9 136,133 + PFLU_RS00640 0.73 -0.1 136,133 + PFLU_RS00640 0.73 -2.0 136,134 - PFLU_RS00640 0.73 +1.4 136,134 - PFLU_RS00640 0.73 -1.2 136,208 + PFLU_RS00640 0.80 +0.5 136,208 + PFLU_RS00640 0.80 -0.0 136,208 + PFLU_RS00640 0.80 -2.3 136,208 + PFLU_RS00640 0.80 -1.6 136,208 + PFLU_RS00640 0.80 -0.3 136,208 + PFLU_RS00640 0.80 +0.5 136,208 + PFLU_RS00640 0.80 +0.2 136,208 + PFLU_RS00640 0.80 +0.4 136,208 + PFLU_RS00640 0.80 -0.3 136,208 + PFLU_RS00640 0.80 -0.1 136,208 + PFLU_RS00640 0.80 +0.1 136,208 + PFLU_RS00640 0.80 +0.6 136,208 + PFLU_RS00640 0.80 -0.6 136,208 + PFLU_RS00640 0.80 -0.3 136,209 - PFLU_RS00640 0.81 -0.4 136,209 - PFLU_RS00640 0.81 -0.3 136,209 - PFLU_RS00640 0.81 -2.0 136,209 - PFLU_RS00640 0.81 -2.1 136,209 - PFLU_RS00640 0.81 -0.5 136,209 - PFLU_RS00640 0.81 +1.3 136,209 - PFLU_RS00640 0.81 -0.0 136,209 - PFLU_RS00640 0.81 -0.2 136,209 - PFLU_RS00640 0.81 -0.2 136,209 - PFLU_RS00640 0.81 +0.0 136,209 - PFLU_RS00640 0.81 +0.2 136,209 - PFLU_RS00640 0.81 +0.1 136,209 - PFLU_RS00640 0.81 -1.6 136,209 - PFLU_RS00640 0.81 +1.0 136,209 - PFLU_RS00640 0.81 +0.1 136,209 - PFLU_RS00640 0.81 -1.3 136,209 - PFLU_RS00640 0.81 -0.2 136,304 + PFLU_RS00640 0.90 -1.7
Or see this region's nucleotide sequence