Strain Fitness in Pseudomonas sp. S08-1 around OH686_21850

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21840 and OH686_21845 are separated by 7 nucleotidesOH686_21845 and OH686_21850 overlap by 1 nucleotidesOH686_21850 and OH686_21855 are separated by 10 nucleotides OH686_21840: OH686_21840 - Chemotaxis response regulator protein-glutamate methylesterase CheB , at 4,447,155 to 4,448,228 _21840 OH686_21845: OH686_21845 - Chemotaxis protein methyltransferase CheR , at 4,448,236 to 4,449,045 _21845 OH686_21850: OH686_21850 - Positive regulator of CheA protein activity (CheW), at 4,449,045 to 4,449,563 _21850 OH686_21855: OH686_21855 - Methyl-accepting chemotaxis sensor/transducer protein, at 4,449,574 to 4,451,214 _21855 Position (kb) 4449 4450Strain fitness (log2 ratio) -2 -1 0 1at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.080 kb on - strand, within OH686_21840at 4448.387 kb on + strand, within OH686_21845at 4448.387 kb on + strand, within OH686_21845at 4448.388 kb on - strand, within OH686_21845at 4448.388 kb on - strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.589 kb on - strand, within OH686_21845at 4448.589 kb on - strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.801 kb on + strand, within OH686_21845at 4448.801 kb on + strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.879 kb on + strand, within OH686_21845at 4448.879 kb on + strand, within OH686_21845at 4448.880 kb on - strand, within OH686_21845at 4448.880 kb on - strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4449.000 kb on - strandat 4449.116 kb on + strand, within OH686_21850at 4449.116 kb on + strand, within OH686_21850at 4449.120 kb on - strand, within OH686_21850at 4449.120 kb on - strand, within OH686_21850at 4449.439 kb on + strand, within OH686_21850at 4449.440 kb on - strand, within OH686_21850at 4449.479 kb on - strand, within OH686_21850at 4449.479 kb on - strand, within OH686_21850at 4449.528 kb on + strandat 4449.529 kb on - strandat 4449.720 kb on - strandat 4449.923 kb on - strand, within OH686_21855at 4449.934 kb on + strand, within OH686_21855at 4449.934 kb on + strand, within OH686_21855at 4449.935 kb on - strand, within OH686_21855at 4449.935 kb on - strand, within OH686_21855at 4449.935 kb on - strand, within OH686_21855at 4450.030 kb on + strand, within OH686_21855at 4450.031 kb on - strand, within OH686_21855at 4450.121 kb on + strand, within OH686_21855at 4450.404 kb on + strand, within OH686_21855at 4450.405 kb on - strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.408 kb on + strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.409 kb on - strand, within OH686_21855at 4450.443 kb on + strand, within OH686_21855at 4450.444 kb on - strand, within OH686_21855at 4450.444 kb on - strand, within OH686_21855at 4450.444 kb on - strand, within OH686_21855at 4450.444 kb on - strand, within OH686_21855at 4450.444 kb on - strand, within OH686_21855at 4450.495 kb on + strand, within OH686_21855at 4450.495 kb on + strand, within OH686_21855at 4450.495 kb on + strand, within OH686_21855at 4450.495 kb on + strand, within OH686_21855at 4450.495 kb on + strand, within OH686_21855at 4450.496 kb on - strand, within OH686_21855at 4450.496 kb on - strand, within OH686_21855

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,448,079 + OH686_21840 0.86 -0.2
4,448,079 + OH686_21840 0.86 -0.2
4,448,079 + OH686_21840 0.86 +0.3
4,448,079 + OH686_21840 0.86 +0.0
4,448,080 - OH686_21840 0.86 -0.3
4,448,387 + OH686_21845 0.19 +0.0
4,448,387 + OH686_21845 0.19 +0.1
4,448,388 - OH686_21845 0.19 +0.7
4,448,388 - OH686_21845 0.19 +0.3
4,448,588 + OH686_21845 0.43 +0.7
4,448,588 + OH686_21845 0.43 -0.3
4,448,588 + OH686_21845 0.43 +0.8
4,448,588 + OH686_21845 0.43 -0.4
4,448,588 + OH686_21845 0.43 -1.4
4,448,588 + OH686_21845 0.43 -0.6
4,448,588 + OH686_21845 0.43 +0.3
4,448,589 - OH686_21845 0.44 +0.4
4,448,589 - OH686_21845 0.44 -0.1
4,448,693 + OH686_21845 0.56 -1.5
4,448,693 + OH686_21845 0.56 -1.7
4,448,693 + OH686_21845 0.56 -1.0
4,448,694 - OH686_21845 0.57 -0.5
4,448,694 - OH686_21845 0.57 +0.2
4,448,694 - OH686_21845 0.57 +0.5
4,448,694 - OH686_21845 0.57 -0.3
4,448,694 - OH686_21845 0.57 -0.4
4,448,801 + OH686_21845 0.70 +0.3
4,448,801 + OH686_21845 0.70 -0.1
4,448,802 - OH686_21845 0.70 +0.3
4,448,802 - OH686_21845 0.70 -0.8
4,448,802 - OH686_21845 0.70 -0.1
4,448,802 - OH686_21845 0.70 +0.1
4,448,802 - OH686_21845 0.70 -0.8
4,448,802 - OH686_21845 0.70 +0.5
4,448,879 + OH686_21845 0.79 -0.5
4,448,879 + OH686_21845 0.79 -1.2
4,448,880 - OH686_21845 0.80 -0.3
4,448,880 - OH686_21845 0.80 +0.1
4,448,885 + OH686_21845 0.80 +0.6
4,448,885 + OH686_21845 0.80 -0.8
4,448,885 + OH686_21845 0.80 -0.6
4,448,886 - OH686_21845 0.80 -1.3
4,448,886 - OH686_21845 0.80 -1.5
4,448,886 - OH686_21845 0.80 -0.8
4,448,886 - OH686_21845 0.80 -0.1
4,448,886 - OH686_21845 0.80 +1.3
4,448,886 - OH686_21845 0.80 -0.0
4,448,886 - OH686_21845 0.80 +0.4
4,449,000 - -0.8
4,449,116 + OH686_21850 0.14 -0.4
4,449,116 + OH686_21850 0.14 +0.6
4,449,120 - OH686_21850 0.14 -0.5
4,449,120 - OH686_21850 0.14 -0.3
4,449,439 + OH686_21850 0.76 -1.0
4,449,440 - OH686_21850 0.76 +0.4
4,449,479 - OH686_21850 0.84 +0.4
4,449,479 - OH686_21850 0.84 -0.4
4,449,528 + +0.1
4,449,529 - -0.2
4,449,720 - +1.6
4,449,923 - OH686_21855 0.21 +1.1
4,449,934 + OH686_21855 0.22 +0.6
4,449,934 + OH686_21855 0.22 -0.2
4,449,935 - OH686_21855 0.22 -0.2
4,449,935 - OH686_21855 0.22 +0.1
4,449,935 - OH686_21855 0.22 +0.1
4,450,030 + OH686_21855 0.28 -0.9
4,450,031 - OH686_21855 0.28 -0.2
4,450,121 + OH686_21855 0.33 -0.6
4,450,404 + OH686_21855 0.51 -0.8
4,450,405 - OH686_21855 0.51 -0.3
4,450,408 + OH686_21855 0.51 +0.8
4,450,408 + OH686_21855 0.51 +1.3
4,450,408 + OH686_21855 0.51 -0.3
4,450,408 + OH686_21855 0.51 +1.0
4,450,408 + OH686_21855 0.51 -0.6
4,450,408 + OH686_21855 0.51 -0.3
4,450,408 + OH686_21855 0.51 -0.5
4,450,408 + OH686_21855 0.51 +0.4
4,450,408 + OH686_21855 0.51 -0.7
4,450,408 + OH686_21855 0.51 -0.5
4,450,408 + OH686_21855 0.51 -0.5
4,450,408 + OH686_21855 0.51 +0.4
4,450,408 + OH686_21855 0.51 -2.7
4,450,408 + OH686_21855 0.51 +0.8
4,450,409 - OH686_21855 0.51 -0.2
4,450,409 - OH686_21855 0.51 -1.0
4,450,409 - OH686_21855 0.51 -0.3
4,450,409 - OH686_21855 0.51 -0.6
4,450,409 - OH686_21855 0.51 -0.4
4,450,409 - OH686_21855 0.51 +0.0
4,450,409 - OH686_21855 0.51 +0.8
4,450,409 - OH686_21855 0.51 -0.2
4,450,409 - OH686_21855 0.51 +0.6
4,450,443 + OH686_21855 0.53 -0.4
4,450,444 - OH686_21855 0.53 -0.8
4,450,444 - OH686_21855 0.53 -0.6
4,450,444 - OH686_21855 0.53 +0.9
4,450,444 - OH686_21855 0.53 +0.3
4,450,444 - OH686_21855 0.53 -0.5
4,450,495 + OH686_21855 0.56 -0.2
4,450,495 + OH686_21855 0.56 -0.9
4,450,495 + OH686_21855 0.56 +0.1
4,450,495 + OH686_21855 0.56 +0.4
4,450,495 + OH686_21855 0.56 +0.6
4,450,496 - OH686_21855 0.56 -0.1
4,450,496 - OH686_21855 0.56 -0.1

Or see this region's nucleotide sequence