Strain Fitness in Pseudomonas sp. S08-1 around OH686_17085

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17080 and OH686_17085 overlap by 4 nucleotidesOH686_17085 and OH686_17090 overlap by 23 nucleotidesOH686_17090 and OH686_17095 are separated by 13 nucleotides OH686_17080: OH686_17080 - Carbamoyl-phosphate synthase large chain , at 3,566,021 to 3,569,242 _17080 OH686_17085: OH686_17085 - Transcription elongation factor GreA, at 3,569,239 to 3,569,715 _17085 OH686_17090: OH686_17090 - hypothetical protein, at 3,569,693 to 3,570,127 _17090 OH686_17095: OH686_17095 - RNA-binding protein YhbY, at 3,570,141 to 3,570,452 _17095 Position (kb) 3569 3570Strain fitness (log2 ratio) -2 -1 0 1at 3569.248 kb on + strandat 3569.248 kb on + strandat 3569.248 kb on + strandat 3569.248 kb on + strandat 3569.249 kb on - strandat 3569.249 kb on - strandat 3569.249 kb on - strandat 3569.249 kb on - strandat 3569.249 kb on - strandat 3569.249 kb on - strandat 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.291 kb on + strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.292 kb on - strand, within OH686_17085at 3569.380 kb on + strand, within OH686_17085at 3569.381 kb on - strand, within OH686_17085at 3569.381 kb on - strand, within OH686_17085at 3569.505 kb on + strand, within OH686_17085at 3569.551 kb on + strand, within OH686_17085at 3569.551 kb on + strand, within OH686_17085at 3569.552 kb on - strand, within OH686_17085at 3569.552 kb on - strand, within OH686_17085at 3569.686 kb on + strandat 3569.709 kb on + strandat 3569.709 kb on + strandat 3569.710 kb on - strandat 3569.710 kb on - strandat 3569.710 kb on - strandat 3569.710 kb on - strandat 3569.713 kb on + strandat 3569.713 kb on + strandat 3569.713 kb on + strandat 3569.713 kb on + strandat 3569.714 kb on - strandat 3569.714 kb on - strandat 3569.714 kb on - strandat 3569.714 kb on - strandat 3569.714 kb on - strandat 3569.714 kb on - strandat 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.059 kb on + strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.060 kb on - strand, within OH686_17090at 3570.200 kb on - strand, within OH686_17095at 3570.200 kb on - strand, within OH686_17095at 3570.452 kb on + strandat 3570.452 kb on + strandat 3570.475 kb on + strandat 3570.475 kb on + strandat 3570.476 kb on - strandat 3570.549 kb on - strandat 3570.549 kb on - strandat 3570.549 kb on - strandat 3570.554 kb on - strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.617 kb on + strandat 3570.618 kb on - strandat 3570.618 kb on - strandat 3570.618 kb on - strandat 3570.618 kb on - strandat 3570.618 kb on - strandat 3570.667 kb on + strandat 3570.667 kb on + strandat 3570.704 kb on + strandat 3570.704 kb on + strandat 3570.704 kb on + strandat 3570.705 kb on - strandat 3570.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,569,248 + -2.1
3,569,248 + -0.5
3,569,248 + +1.4
3,569,248 + -0.0
3,569,249 - -0.4
3,569,249 - +0.2
3,569,249 - -0.7
3,569,249 - -1.0
3,569,249 - -0.1
3,569,249 - +0.2
3,569,291 + OH686_17085 0.11 -0.6
3,569,291 + OH686_17085 0.11 -0.2
3,569,291 + OH686_17085 0.11 +0.8
3,569,291 + OH686_17085 0.11 -1.2
3,569,291 + OH686_17085 0.11 -0.3
3,569,291 + OH686_17085 0.11 -0.7
3,569,291 + OH686_17085 0.11 -0.6
3,569,291 + OH686_17085 0.11 -0.6
3,569,291 + OH686_17085 0.11 +0.8
3,569,291 + OH686_17085 0.11 -0.3
3,569,292 - OH686_17085 0.11 +0.5
3,569,292 - OH686_17085 0.11 -0.4
3,569,292 - OH686_17085 0.11 +0.8
3,569,292 - OH686_17085 0.11 +0.5
3,569,292 - OH686_17085 0.11 +0.4
3,569,292 - OH686_17085 0.11 -0.6
3,569,292 - OH686_17085 0.11 +0.2
3,569,380 + OH686_17085 0.30 -0.0
3,569,381 - OH686_17085 0.30 +0.0
3,569,381 - OH686_17085 0.30 -0.9
3,569,505 + OH686_17085 0.56 +0.8
3,569,551 + OH686_17085 0.65 -0.9
3,569,551 + OH686_17085 0.65 -0.7
3,569,552 - OH686_17085 0.66 -0.1
3,569,552 - OH686_17085 0.66 -0.2
3,569,686 + +0.4
3,569,709 + +0.0
3,569,709 + -0.6
3,569,710 - -0.2
3,569,710 - +0.5
3,569,710 - +0.9
3,569,710 - -0.5
3,569,713 + -0.4
3,569,713 + -0.2
3,569,713 + -0.2
3,569,713 + +0.2
3,569,714 - +0.0
3,569,714 - -0.2
3,569,714 - -0.4
3,569,714 - +0.7
3,569,714 - -0.0
3,569,714 - +0.5
3,570,059 + OH686_17090 0.84 +0.5
3,570,059 + OH686_17090 0.84 +1.0
3,570,059 + OH686_17090 0.84 +0.7
3,570,059 + OH686_17090 0.84 -0.0
3,570,059 + OH686_17090 0.84 -0.1
3,570,059 + OH686_17090 0.84 +0.4
3,570,059 + OH686_17090 0.84 -0.3
3,570,060 - OH686_17090 0.84 -0.3
3,570,060 - OH686_17090 0.84 -0.6
3,570,060 - OH686_17090 0.84 -0.6
3,570,060 - OH686_17090 0.84 +0.1
3,570,060 - OH686_17090 0.84 -0.2
3,570,060 - OH686_17090 0.84 -0.6
3,570,060 - OH686_17090 0.84 -0.2
3,570,200 - OH686_17095 0.19 +0.1
3,570,200 - OH686_17095 0.19 -0.6
3,570,452 + +0.8
3,570,452 + +0.1
3,570,475 + -0.7
3,570,475 + +0.0
3,570,476 - -0.8
3,570,549 - +0.0
3,570,549 - +0.1
3,570,549 - +0.6
3,570,554 - +0.2
3,570,617 + -0.3
3,570,617 + +0.0
3,570,617 + -0.6
3,570,617 + -1.2
3,570,617 + -0.2
3,570,617 + -1.1
3,570,617 + -1.7
3,570,617 + -0.5
3,570,617 + +0.3
3,570,618 - -1.7
3,570,618 - +1.0
3,570,618 - -0.4
3,570,618 - +0.4
3,570,618 - +0.2
3,570,667 + -0.5
3,570,667 + -0.5
3,570,704 + +0.0
3,570,704 + +0.3
3,570,704 + -0.7
3,570,705 - -0.0
3,570,705 - +0.1

Or see this region's nucleotide sequence