Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_17030 and OH686_17035 overlap by 8 nucleotides OH686_17035 and OH686_17040 are separated by 58 nucleotides OH686_17040 and OH686_17045 are separated by 97 nucleotides OH686_17045 and OH686_17050 are separated by 64 nucleotides
OH686_17030: OH686_17030 - Ribosome association toxin RatA, at 3,556,308 to 3,556,742
_17030
OH686_17035: OH686_17035 - UPF0125 protein RatB, at 3,556,735 to 3,557,040
_17035
OH686_17040: OH686_17040 - Outer membrane beta-barrel assembly protein BamE, at 3,557,099 to 3,557,614
_17040
OH686_17045: OH686_17045 - Ferric uptake regulation protein FUR, at 3,557,712 to 3,558,122
_17045
OH686_17050: OH686_17050 - DNA repair protein RecN, at 3,558,187 to 3,559,860
_17050
Position (kb)
3557
3558
3559 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3556.734 kb on + strand at 3556.734 kb on + strand at 3556.734 kb on + strand at 3556.734 kb on + strand at 3556.734 kb on + strand at 3556.735 kb on - strand at 3556.735 kb on - strand at 3556.750 kb on - strand at 3556.762 kb on + strand at 3556.763 kb on - strand at 3556.763 kb on - strand at 3556.790 kb on + strand, within OH686_17035 at 3556.790 kb on + strand, within OH686_17035 at 3556.791 kb on - strand, within OH686_17035 at 3556.893 kb on + strand, within OH686_17035 at 3556.893 kb on + strand, within OH686_17035 at 3556.894 kb on - strand, within OH686_17035 at 3556.894 kb on - strand, within OH686_17035 at 3556.907 kb on + strand, within OH686_17035 at 3556.907 kb on + strand, within OH686_17035 at 3556.907 kb on + strand, within OH686_17035 at 3556.907 kb on + strand, within OH686_17035 at 3556.907 kb on + strand, within OH686_17035 at 3556.908 kb on - strand, within OH686_17035 at 3556.908 kb on - strand, within OH686_17035 at 3556.908 kb on - strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.960 kb on + strand, within OH686_17035 at 3556.961 kb on - strand, within OH686_17035 at 3556.961 kb on - strand, within OH686_17035 at 3556.961 kb on - strand, within OH686_17035 at 3556.961 kb on - strand, within OH686_17035 at 3557.092 kb on + strand at 3557.092 kb on + strand at 3557.093 kb on - strand at 3557.093 kb on - strand at 3557.093 kb on - strand at 3557.093 kb on - strand at 3557.100 kb on + strand at 3557.101 kb on - strand at 3557.663 kb on + strand at 3558.120 kb on + strand at 3558.120 kb on + strand at 3558.120 kb on + strand at 3558.120 kb on + strand at 3558.121 kb on - strand at 3558.121 kb on - strand at 3558.121 kb on - strand at 3558.121 kb on - strand at 3558.121 kb on - strand at 3558.121 kb on - strand at 3558.291 kb on + strand at 3558.427 kb on + strand, within OH686_17050 at 3558.428 kb on - strand, within OH686_17050 at 3558.428 kb on - strand, within OH686_17050 at 3558.791 kb on + strand, within OH686_17050 at 3558.803 kb on + strand, within OH686_17050 at 3558.803 kb on + strand, within OH686_17050 at 3558.803 kb on + strand, within OH686_17050 at 3558.804 kb on - strand, within OH686_17050 at 3558.804 kb on - strand, within OH686_17050 at 3558.804 kb on - strand, within OH686_17050 at 3558.804 kb on - strand, within OH686_17050 at 3558.832 kb on + strand, within OH686_17050 at 3558.833 kb on - strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.935 kb on + strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050 at 3558.936 kb on - strand, within OH686_17050
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,556,734 + -0.8 3,556,734 + +0.1 3,556,734 + -1.1 3,556,734 + +0.3 3,556,734 + +1.2 3,556,735 - -0.4 3,556,735 - +0.8 3,556,750 - -0.4 3,556,762 + -0.1 3,556,763 - -0.6 3,556,763 - +0.2 3,556,790 + OH686_17035 0.18 +0.5 3,556,790 + OH686_17035 0.18 -0.0 3,556,791 - OH686_17035 0.18 +1.0 3,556,893 + OH686_17035 0.52 +0.9 3,556,893 + OH686_17035 0.52 -0.6 3,556,894 - OH686_17035 0.52 -0.6 3,556,894 - OH686_17035 0.52 -0.4 3,556,907 + OH686_17035 0.56 +1.1 3,556,907 + OH686_17035 0.56 +0.1 3,556,907 + OH686_17035 0.56 +1.3 3,556,907 + OH686_17035 0.56 -0.4 3,556,907 + OH686_17035 0.56 -0.5 3,556,908 - OH686_17035 0.57 -0.3 3,556,908 - OH686_17035 0.57 -0.3 3,556,908 - OH686_17035 0.57 -1.9 3,556,960 + OH686_17035 0.74 +0.8 3,556,960 + OH686_17035 0.74 +0.2 3,556,960 + OH686_17035 0.74 -0.6 3,556,960 + OH686_17035 0.74 -0.7 3,556,960 + OH686_17035 0.74 -0.7 3,556,960 + OH686_17035 0.74 +0.0 3,556,961 - OH686_17035 0.74 -0.4 3,556,961 - OH686_17035 0.74 +0.2 3,556,961 - OH686_17035 0.74 +1.0 3,556,961 - OH686_17035 0.74 -0.2 3,557,092 + -0.0 3,557,092 + -0.2 3,557,093 - -0.6 3,557,093 - -0.4 3,557,093 - +0.4 3,557,093 - -0.8 3,557,100 + -0.1 3,557,101 - +0.0 3,557,663 + +0.8 3,558,120 + -0.9 3,558,120 + +0.8 3,558,120 + -0.3 3,558,120 + +0.7 3,558,121 - -0.6 3,558,121 - -0.7 3,558,121 - +1.7 3,558,121 - -0.7 3,558,121 - -0.4 3,558,121 - +0.7 3,558,291 + -0.8 3,558,427 + OH686_17050 0.14 -0.4 3,558,428 - OH686_17050 0.14 +0.8 3,558,428 - OH686_17050 0.14 -0.6 3,558,791 + OH686_17050 0.36 +0.3 3,558,803 + OH686_17050 0.37 +0.5 3,558,803 + OH686_17050 0.37 -0.2 3,558,803 + OH686_17050 0.37 -0.2 3,558,804 - OH686_17050 0.37 -3.2 3,558,804 - OH686_17050 0.37 +0.2 3,558,804 - OH686_17050 0.37 -0.1 3,558,804 - OH686_17050 0.37 -1.9 3,558,832 + OH686_17050 0.39 +1.1 3,558,833 - OH686_17050 0.39 -0.0 3,558,935 + OH686_17050 0.45 -1.0 3,558,935 + OH686_17050 0.45 -0.5 3,558,935 + OH686_17050 0.45 +0.8 3,558,935 + OH686_17050 0.45 -0.8 3,558,935 + OH686_17050 0.45 -1.2 3,558,935 + OH686_17050 0.45 +0.3 3,558,935 + OH686_17050 0.45 +0.1 3,558,935 + OH686_17050 0.45 -0.5 3,558,936 - OH686_17050 0.45 -0.6 3,558,936 - OH686_17050 0.45 -1.7 3,558,936 - OH686_17050 0.45 -0.6 3,558,936 - OH686_17050 0.45 -1.5 3,558,936 - OH686_17050 0.45 -2.0 3,558,936 - OH686_17050 0.45 +0.2 3,558,936 - OH686_17050 0.45 -0.6 3,558,936 - OH686_17050 0.45 +1.9 3,558,936 - OH686_17050 0.45 +0.1 3,558,936 - OH686_17050 0.45 -0.5 3,558,936 - OH686_17050 0.45 -0.1 3,558,936 - OH686_17050 0.45 +0.4 3,558,936 - OH686_17050 0.45 +1.0 3,558,936 - OH686_17050 0.45 +0.9 3,558,936 - OH686_17050 0.45 +0.8 3,558,936 - OH686_17050 0.45 -1.2 3,558,936 - OH686_17050 0.45 -0.3 3,558,936 - OH686_17050 0.45 +0.0 3,558,936 - OH686_17050 0.45 +0.1 3,558,936 - OH686_17050 0.45 -0.4 3,558,936 - OH686_17050 0.45 -1.4
Or see this region's nucleotide sequence