Strain Fitness in Pseudomonas sp. S08-1 around OH686_17045

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17030 and OH686_17035 overlap by 8 nucleotidesOH686_17035 and OH686_17040 are separated by 58 nucleotidesOH686_17040 and OH686_17045 are separated by 97 nucleotidesOH686_17045 and OH686_17050 are separated by 64 nucleotides OH686_17030: OH686_17030 - Ribosome association toxin RatA, at 3,556,308 to 3,556,742 _17030 OH686_17035: OH686_17035 - UPF0125 protein RatB, at 3,556,735 to 3,557,040 _17035 OH686_17040: OH686_17040 - Outer membrane beta-barrel assembly protein BamE, at 3,557,099 to 3,557,614 _17040 OH686_17045: OH686_17045 - Ferric uptake regulation protein FUR, at 3,557,712 to 3,558,122 _17045 OH686_17050: OH686_17050 - DNA repair protein RecN, at 3,558,187 to 3,559,860 _17050 Position (kb) 3557 3558 3559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3556.734 kb on + strandat 3556.734 kb on + strandat 3556.734 kb on + strandat 3556.734 kb on + strandat 3556.734 kb on + strandat 3556.735 kb on - strandat 3556.735 kb on - strandat 3556.750 kb on - strandat 3556.762 kb on + strandat 3556.763 kb on - strandat 3556.763 kb on - strandat 3556.790 kb on + strand, within OH686_17035at 3556.790 kb on + strand, within OH686_17035at 3556.791 kb on - strand, within OH686_17035at 3556.893 kb on + strand, within OH686_17035at 3556.893 kb on + strand, within OH686_17035at 3556.894 kb on - strand, within OH686_17035at 3556.894 kb on - strand, within OH686_17035at 3556.907 kb on + strand, within OH686_17035at 3556.907 kb on + strand, within OH686_17035at 3556.907 kb on + strand, within OH686_17035at 3556.907 kb on + strand, within OH686_17035at 3556.907 kb on + strand, within OH686_17035at 3556.908 kb on - strand, within OH686_17035at 3556.908 kb on - strand, within OH686_17035at 3556.908 kb on - strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.960 kb on + strand, within OH686_17035at 3556.961 kb on - strand, within OH686_17035at 3556.961 kb on - strand, within OH686_17035at 3556.961 kb on - strand, within OH686_17035at 3556.961 kb on - strand, within OH686_17035at 3557.092 kb on + strandat 3557.092 kb on + strandat 3557.093 kb on - strandat 3557.093 kb on - strandat 3557.093 kb on - strandat 3557.093 kb on - strandat 3557.100 kb on + strandat 3557.101 kb on - strandat 3557.663 kb on + strandat 3558.120 kb on + strandat 3558.120 kb on + strandat 3558.120 kb on + strandat 3558.120 kb on + strandat 3558.121 kb on - strandat 3558.121 kb on - strandat 3558.121 kb on - strandat 3558.121 kb on - strandat 3558.121 kb on - strandat 3558.121 kb on - strandat 3558.291 kb on + strandat 3558.427 kb on + strand, within OH686_17050at 3558.428 kb on - strand, within OH686_17050at 3558.428 kb on - strand, within OH686_17050at 3558.791 kb on + strand, within OH686_17050at 3558.803 kb on + strand, within OH686_17050at 3558.803 kb on + strand, within OH686_17050at 3558.803 kb on + strand, within OH686_17050at 3558.804 kb on - strand, within OH686_17050at 3558.804 kb on - strand, within OH686_17050at 3558.804 kb on - strand, within OH686_17050at 3558.804 kb on - strand, within OH686_17050at 3558.832 kb on + strand, within OH686_17050at 3558.833 kb on - strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.935 kb on + strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050at 3558.936 kb on - strand, within OH686_17050

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,556,734 + -0.8
3,556,734 + +0.1
3,556,734 + -1.1
3,556,734 + +0.3
3,556,734 + +1.2
3,556,735 - -0.4
3,556,735 - +0.8
3,556,750 - -0.4
3,556,762 + -0.1
3,556,763 - -0.6
3,556,763 - +0.2
3,556,790 + OH686_17035 0.18 +0.5
3,556,790 + OH686_17035 0.18 -0.0
3,556,791 - OH686_17035 0.18 +1.0
3,556,893 + OH686_17035 0.52 +0.9
3,556,893 + OH686_17035 0.52 -0.6
3,556,894 - OH686_17035 0.52 -0.6
3,556,894 - OH686_17035 0.52 -0.4
3,556,907 + OH686_17035 0.56 +1.1
3,556,907 + OH686_17035 0.56 +0.1
3,556,907 + OH686_17035 0.56 +1.3
3,556,907 + OH686_17035 0.56 -0.4
3,556,907 + OH686_17035 0.56 -0.5
3,556,908 - OH686_17035 0.57 -0.3
3,556,908 - OH686_17035 0.57 -0.3
3,556,908 - OH686_17035 0.57 -1.9
3,556,960 + OH686_17035 0.74 +0.8
3,556,960 + OH686_17035 0.74 +0.2
3,556,960 + OH686_17035 0.74 -0.6
3,556,960 + OH686_17035 0.74 -0.7
3,556,960 + OH686_17035 0.74 -0.7
3,556,960 + OH686_17035 0.74 +0.0
3,556,961 - OH686_17035 0.74 -0.4
3,556,961 - OH686_17035 0.74 +0.2
3,556,961 - OH686_17035 0.74 +1.0
3,556,961 - OH686_17035 0.74 -0.2
3,557,092 + -0.0
3,557,092 + -0.2
3,557,093 - -0.6
3,557,093 - -0.4
3,557,093 - +0.4
3,557,093 - -0.8
3,557,100 + -0.1
3,557,101 - +0.0
3,557,663 + +0.8
3,558,120 + -0.9
3,558,120 + +0.8
3,558,120 + -0.3
3,558,120 + +0.7
3,558,121 - -0.6
3,558,121 - -0.7
3,558,121 - +1.7
3,558,121 - -0.7
3,558,121 - -0.4
3,558,121 - +0.7
3,558,291 + -0.8
3,558,427 + OH686_17050 0.14 -0.4
3,558,428 - OH686_17050 0.14 +0.8
3,558,428 - OH686_17050 0.14 -0.6
3,558,791 + OH686_17050 0.36 +0.3
3,558,803 + OH686_17050 0.37 +0.5
3,558,803 + OH686_17050 0.37 -0.2
3,558,803 + OH686_17050 0.37 -0.2
3,558,804 - OH686_17050 0.37 -3.2
3,558,804 - OH686_17050 0.37 +0.2
3,558,804 - OH686_17050 0.37 -0.1
3,558,804 - OH686_17050 0.37 -1.9
3,558,832 + OH686_17050 0.39 +1.1
3,558,833 - OH686_17050 0.39 -0.0
3,558,935 + OH686_17050 0.45 -1.0
3,558,935 + OH686_17050 0.45 -0.5
3,558,935 + OH686_17050 0.45 +0.8
3,558,935 + OH686_17050 0.45 -0.8
3,558,935 + OH686_17050 0.45 -1.2
3,558,935 + OH686_17050 0.45 +0.3
3,558,935 + OH686_17050 0.45 +0.1
3,558,935 + OH686_17050 0.45 -0.5
3,558,936 - OH686_17050 0.45 -0.6
3,558,936 - OH686_17050 0.45 -1.7
3,558,936 - OH686_17050 0.45 -0.6
3,558,936 - OH686_17050 0.45 -1.5
3,558,936 - OH686_17050 0.45 -2.0
3,558,936 - OH686_17050 0.45 +0.2
3,558,936 - OH686_17050 0.45 -0.6
3,558,936 - OH686_17050 0.45 +1.9
3,558,936 - OH686_17050 0.45 +0.1
3,558,936 - OH686_17050 0.45 -0.5
3,558,936 - OH686_17050 0.45 -0.1
3,558,936 - OH686_17050 0.45 +0.4
3,558,936 - OH686_17050 0.45 +1.0
3,558,936 - OH686_17050 0.45 +0.9
3,558,936 - OH686_17050 0.45 +0.8
3,558,936 - OH686_17050 0.45 -1.2
3,558,936 - OH686_17050 0.45 -0.3
3,558,936 - OH686_17050 0.45 +0.0
3,558,936 - OH686_17050 0.45 +0.1
3,558,936 - OH686_17050 0.45 -0.4
3,558,936 - OH686_17050 0.45 -1.4

Or see this region's nucleotide sequence