Strain Fitness in Pseudomonas sp. S08-1 around OH686_10235

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_10230 and OH686_10235 overlap by 16 nucleotidesOH686_10235 and OH686_10240 overlap by 4 nucleotides OH686_10230: OH686_10230 - Efflux ABC transporter, permease protein, at 2,094,869 to 2,096,053 _10230 OH686_10235: OH686_10235 - hypothetical protein, at 2,096,038 to 2,096,301 _10235 OH686_10240: OH686_10240 - beta-ketoacyl synthase, at 2,096,298 to 2,097,407 _10240 Position (kb) 2096 2097Strain fitness (log2 ratio) -1 0 1at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.052 kb on + strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.053 kb on - strand, within OH686_10230at 2095.347 kb on + strand, within OH686_10230at 2095.347 kb on + strand, within OH686_10230at 2095.348 kb on - strand, within OH686_10230at 2095.348 kb on - strand, within OH686_10230at 2095.583 kb on + strand, within OH686_10230at 2095.584 kb on - strand, within OH686_10230at 2095.584 kb on - strand, within OH686_10230at 2095.691 kb on + strand, within OH686_10230at 2095.691 kb on + strand, within OH686_10230at 2095.692 kb on - strand, within OH686_10230at 2095.692 kb on - strand, within OH686_10230at 2095.785 kb on + strand, within OH686_10230at 2095.801 kb on + strand, within OH686_10230at 2095.802 kb on - strand, within OH686_10230at 2095.802 kb on - strand, within OH686_10230at 2095.802 kb on - strand, within OH686_10230at 2095.802 kb on - strand, within OH686_10230at 2096.051 kb on + strandat 2096.051 kb on + strandat 2096.051 kb on + strandat 2096.051 kb on + strandat 2096.052 kb on - strandat 2096.052 kb on - strandat 2096.052 kb on - strandat 2096.212 kb on + strand, within OH686_10235at 2096.213 kb on - strand, within OH686_10235at 2096.310 kb on + strandat 2096.439 kb on + strand, within OH686_10240at 2096.440 kb on - strand, within OH686_10240at 2096.440 kb on - strand, within OH686_10240at 2096.440 kb on - strand, within OH686_10240at 2096.718 kb on + strand, within OH686_10240at 2096.719 kb on - strand, within OH686_10240at 2096.719 kb on - strand, within OH686_10240at 2096.719 kb on - strand, within OH686_10240at 2096.719 kb on - strand, within OH686_10240at 2096.719 kb on - strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.748 kb on + strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.749 kb on - strand, within OH686_10240at 2096.758 kb on + strand, within OH686_10240at 2096.758 kb on + strand, within OH686_10240at 2096.759 kb on - strand, within OH686_10240at 2096.759 kb on - strand, within OH686_10240at 2096.759 kb on - strand, within OH686_10240at 2096.889 kb on + strand, within OH686_10240at 2096.889 kb on + strand, within OH686_10240at 2096.889 kb on + strand, within OH686_10240at 2096.889 kb on + strand, within OH686_10240at 2096.889 kb on + strand, within OH686_10240at 2096.890 kb on - strand, within OH686_10240at 2096.890 kb on - strand, within OH686_10240at 2096.890 kb on - strand, within OH686_10240at 2096.890 kb on - strand, within OH686_10240at 2097.223 kb on + strand, within OH686_10240at 2097.224 kb on - strand, within OH686_10240at 2097.264 kb on + strand, within OH686_10240at 2097.264 kb on + strand, within OH686_10240at 2097.265 kb on - strand, within OH686_10240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
2,095,052 + OH686_10230 0.15 -1.4
2,095,052 + OH686_10230 0.15 -0.3
2,095,052 + OH686_10230 0.15 +0.0
2,095,052 + OH686_10230 0.15 -0.5
2,095,052 + OH686_10230 0.15 +0.4
2,095,052 + OH686_10230 0.15 -0.5
2,095,052 + OH686_10230 0.15 +0.7
2,095,052 + OH686_10230 0.15 -0.4
2,095,052 + OH686_10230 0.15 -1.1
2,095,052 + OH686_10230 0.15 -0.6
2,095,052 + OH686_10230 0.15 +0.1
2,095,052 + OH686_10230 0.15 +0.3
2,095,052 + OH686_10230 0.15 -1.7
2,095,052 + OH686_10230 0.15 -0.7
2,095,053 - OH686_10230 0.16 -1.0
2,095,053 - OH686_10230 0.16 +0.1
2,095,053 - OH686_10230 0.16 +0.4
2,095,053 - OH686_10230 0.16 -0.3
2,095,053 - OH686_10230 0.16 -0.8
2,095,053 - OH686_10230 0.16 +0.1
2,095,053 - OH686_10230 0.16 +0.4
2,095,053 - OH686_10230 0.16 +0.5
2,095,053 - OH686_10230 0.16 -0.6
2,095,347 + OH686_10230 0.40 +0.2
2,095,347 + OH686_10230 0.40 +1.1
2,095,348 - OH686_10230 0.40 +1.7
2,095,348 - OH686_10230 0.40 -0.3
2,095,583 + OH686_10230 0.60 +0.5
2,095,584 - OH686_10230 0.60 +0.2
2,095,584 - OH686_10230 0.60 -1.5
2,095,691 + OH686_10230 0.69 +0.5
2,095,691 + OH686_10230 0.69 -0.0
2,095,692 - OH686_10230 0.69 -0.2
2,095,692 - OH686_10230 0.69 +0.1
2,095,785 + OH686_10230 0.77 -0.2
2,095,801 + OH686_10230 0.79 -0.3
2,095,802 - OH686_10230 0.79 +0.3
2,095,802 - OH686_10230 0.79 +0.3
2,095,802 - OH686_10230 0.79 +0.2
2,095,802 - OH686_10230 0.79 -0.3
2,096,051 + +0.0
2,096,051 + +0.7
2,096,051 + +0.4
2,096,051 + +0.2
2,096,052 - +0.7
2,096,052 - -0.5
2,096,052 - -0.9
2,096,212 + OH686_10235 0.66 -1.4
2,096,213 - OH686_10235 0.66 -0.7
2,096,310 + +0.1
2,096,439 + OH686_10240 0.13 -0.2
2,096,440 - OH686_10240 0.13 -0.7
2,096,440 - OH686_10240 0.13 +0.2
2,096,440 - OH686_10240 0.13 -0.2
2,096,718 + OH686_10240 0.38 -0.4
2,096,719 - OH686_10240 0.38 +0.6
2,096,719 - OH686_10240 0.38 -0.1
2,096,719 - OH686_10240 0.38 -0.0
2,096,719 - OH686_10240 0.38 -0.0
2,096,719 - OH686_10240 0.38 +1.4
2,096,748 + OH686_10240 0.41 -0.3
2,096,748 + OH686_10240 0.41 -0.6
2,096,748 + OH686_10240 0.41 +0.0
2,096,748 + OH686_10240 0.41 +0.7
2,096,748 + OH686_10240 0.41 -0.6
2,096,748 + OH686_10240 0.41 +0.5
2,096,748 + OH686_10240 0.41 +0.7
2,096,748 + OH686_10240 0.41 +0.7
2,096,748 + OH686_10240 0.41 -0.7
2,096,748 + OH686_10240 0.41 -0.5
2,096,749 - OH686_10240 0.41 -0.9
2,096,749 - OH686_10240 0.41 -0.2
2,096,749 - OH686_10240 0.41 -1.4
2,096,749 - OH686_10240 0.41 -0.3
2,096,749 - OH686_10240 0.41 +0.2
2,096,749 - OH686_10240 0.41 +0.1
2,096,749 - OH686_10240 0.41 -0.7
2,096,749 - OH686_10240 0.41 +0.2
2,096,749 - OH686_10240 0.41 +0.2
2,096,749 - OH686_10240 0.41 -1.2
2,096,749 - OH686_10240 0.41 -0.8
2,096,749 - OH686_10240 0.41 -0.8
2,096,749 - OH686_10240 0.41 +0.4
2,096,749 - OH686_10240 0.41 -0.9
2,096,758 + OH686_10240 0.41 -0.4
2,096,758 + OH686_10240 0.41 -0.1
2,096,759 - OH686_10240 0.42 +0.0
2,096,759 - OH686_10240 0.42 +0.7
2,096,759 - OH686_10240 0.42 -0.1
2,096,889 + OH686_10240 0.53 -0.1
2,096,889 + OH686_10240 0.53 -0.7
2,096,889 + OH686_10240 0.53 +0.1
2,096,889 + OH686_10240 0.53 -0.5
2,096,889 + OH686_10240 0.53 +0.0
2,096,890 - OH686_10240 0.53 -0.6
2,096,890 - OH686_10240 0.53 -0.9
2,096,890 - OH686_10240 0.53 -0.6
2,096,890 - OH686_10240 0.53 -1.1
2,097,223 + OH686_10240 0.83 -0.3
2,097,224 - OH686_10240 0.83 +0.9
2,097,264 + OH686_10240 0.87 -0.3
2,097,264 + OH686_10240 0.87 -0.7
2,097,265 - OH686_10240 0.87 -0.4

Or see this region's nucleotide sequence