Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_02540 and OH686_02545 are separated by 12 nucleotides OH686_02545 and OH686_02550 are separated by 13 nucleotides OH686_02550 and OH686_02555 are separated by 37 nucleotides OH686_02555 and OH686_02560 are separated by 12 nucleotides
OH686_02540: OH686_02540 - Von Willebrand factor type A domain protein, associated with Flp pilus assembly, at 540,860 to 542,266
_02540
OH686_02545: OH686_02545 - hypothetical protein, at 542,279 to 542,548
_02545
OH686_02550: OH686_02550 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 542,562 to 544,037
_02550
OH686_02555: OH686_02555 - Flp pilus assembly protein CpaB, at 544,075 to 544,875
_02555
OH686_02560: OH686_02560 - Predicted ATPase with chaperone activity, associated with Flp pilus assembly, at 544,888 to 546,207
_02560
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -2
-1
0
1 at 541.670 kb on + strand, within OH686_02540 at 541.671 kb on - strand, within OH686_02540 at 541.671 kb on - strand, within OH686_02540 at 541.671 kb on - strand, within OH686_02540 at 541.878 kb on + strand, within OH686_02540 at 541.879 kb on - strand, within OH686_02540 at 541.879 kb on - strand, within OH686_02540 at 541.879 kb on - strand, within OH686_02540 at 542.137 kb on + strand at 542.137 kb on + strand at 542.137 kb on + strand at 542.137 kb on + strand at 542.137 kb on + strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.201 kb on + strand at 542.201 kb on + strand at 542.281 kb on - strand at 542.281 kb on - strand at 542.351 kb on + strand, within OH686_02545 at 542.351 kb on + strand, within OH686_02545 at 542.352 kb on - strand, within OH686_02545 at 542.352 kb on - strand, within OH686_02545 at 542.352 kb on - strand, within OH686_02545 at 542.439 kb on + strand, within OH686_02545 at 542.439 kb on + strand, within OH686_02545 at 542.439 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.451 kb on + strand, within OH686_02545 at 542.452 kb on - strand, within OH686_02545 at 542.452 kb on - strand, within OH686_02545 at 542.490 kb on + strand, within OH686_02545 at 542.490 kb on + strand, within OH686_02545 at 542.490 kb on + strand, within OH686_02545 at 542.491 kb on - strand, within OH686_02545 at 542.491 kb on - strand, within OH686_02545 at 542.491 kb on - strand, within OH686_02545 at 542.491 kb on - strand, within OH686_02545 at 542.656 kb on + strand at 542.656 kb on + strand at 542.656 kb on + strand at 542.657 kb on - strand at 542.657 kb on - strand at 542.657 kb on - strand at 542.657 kb on - strand at 542.904 kb on + strand, within OH686_02550 at 542.904 kb on + strand, within OH686_02550 at 542.905 kb on - strand, within OH686_02550 at 542.905 kb on - strand, within OH686_02550 at 543.103 kb on + strand, within OH686_02550 at 543.103 kb on + strand, within OH686_02550 at 543.104 kb on - strand, within OH686_02550 at 543.104 kb on - strand, within OH686_02550 at 543.104 kb on - strand, within OH686_02550 at 543.104 kb on - strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.306 kb on + strand, within OH686_02550 at 543.307 kb on - strand, within OH686_02550 at 543.307 kb on - strand, within OH686_02550 at 543.307 kb on - strand, within OH686_02550 at 543.307 kb on - strand, within OH686_02550 at 543.307 kb on - strand, within OH686_02550 at 543.559 kb on + strand, within OH686_02550 at 543.559 kb on + strand, within OH686_02550 at 543.559 kb on + strand, within OH686_02550 at 543.559 kb on + strand, within OH686_02550 at 543.560 kb on - strand, within OH686_02550 at 543.645 kb on + strand, within OH686_02550 at 543.645 kb on + strand, within OH686_02550 at 543.676 kb on + strand, within OH686_02550 at 543.676 kb on + strand, within OH686_02550 at 543.677 kb on - strand, within OH686_02550 at 543.796 kb on + strand, within OH686_02550 at 543.796 kb on + strand, within OH686_02550 at 543.796 kb on + strand, within OH686_02550 at 543.796 kb on + strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.797 kb on - strand, within OH686_02550 at 543.895 kb on + strand at 543.895 kb on + strand at 543.896 kb on - strand at 543.896 kb on - strand at 543.896 kb on - strand at 544.054 kb on - strand at 544.054 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.337 kb on - strand, within OH686_02555 at 544.852 kb on + strand at 544.863 kb on + strand at 544.863 kb on + strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 541,670 + OH686_02540 0.58 +0.2 541,671 - OH686_02540 0.58 -0.4 541,671 - OH686_02540 0.58 -0.6 541,671 - OH686_02540 0.58 +1.0 541,878 + OH686_02540 0.72 +0.3 541,879 - OH686_02540 0.72 +0.1 541,879 - OH686_02540 0.72 -0.7 541,879 - OH686_02540 0.72 +0.2 542,137 + -1.1 542,137 + -0.3 542,137 + -0.5 542,137 + -1.1 542,137 + -0.4 542,138 - -0.8 542,138 - +0.0 542,138 - +0.1 542,138 - +0.4 542,138 - -0.3 542,138 - -0.1 542,138 - +0.0 542,138 - +0.8 542,138 - -0.7 542,138 - +0.2 542,201 + -1.3 542,201 + +0.9 542,281 - -0.2 542,281 - -0.2 542,351 + OH686_02545 0.27 +0.8 542,351 + OH686_02545 0.27 -0.3 542,352 - OH686_02545 0.27 -0.5 542,352 - OH686_02545 0.27 -0.4 542,352 - OH686_02545 0.27 +0.8 542,439 + OH686_02545 0.59 -0.2 542,439 + OH686_02545 0.59 -0.6 542,439 + OH686_02545 0.59 +0.3 542,451 + OH686_02545 0.64 +0.2 542,451 + OH686_02545 0.64 -0.6 542,451 + OH686_02545 0.64 +0.1 542,451 + OH686_02545 0.64 -0.7 542,451 + OH686_02545 0.64 -0.7 542,451 + OH686_02545 0.64 +0.8 542,452 - OH686_02545 0.64 -0.6 542,452 - OH686_02545 0.64 -1.5 542,490 + OH686_02545 0.78 -0.6 542,490 + OH686_02545 0.78 -0.4 542,490 + OH686_02545 0.78 -0.2 542,491 - OH686_02545 0.79 +0.3 542,491 - OH686_02545 0.79 -0.7 542,491 - OH686_02545 0.79 +0.5 542,491 - OH686_02545 0.79 +1.4 542,656 + +0.1 542,656 + +0.2 542,656 + +0.1 542,657 - +0.2 542,657 - -0.4 542,657 - -0.7 542,657 - -1.8 542,904 + OH686_02550 0.23 +1.5 542,904 + OH686_02550 0.23 -0.2 542,905 - OH686_02550 0.23 -0.1 542,905 - OH686_02550 0.23 +1.2 543,103 + OH686_02550 0.37 -0.2 543,103 + OH686_02550 0.37 +0.1 543,104 - OH686_02550 0.37 -1.6 543,104 - OH686_02550 0.37 -0.4 543,104 - OH686_02550 0.37 +0.2 543,104 - OH686_02550 0.37 +0.8 543,306 + OH686_02550 0.50 -1.4 543,306 + OH686_02550 0.50 +0.3 543,306 + OH686_02550 0.50 -0.2 543,306 + OH686_02550 0.50 +1.7 543,306 + OH686_02550 0.50 +0.5 543,306 + OH686_02550 0.50 +0.2 543,306 + OH686_02550 0.50 +0.6 543,307 - OH686_02550 0.50 +0.9 543,307 - OH686_02550 0.50 -0.1 543,307 - OH686_02550 0.50 -0.0 543,307 - OH686_02550 0.50 -0.6 543,307 - OH686_02550 0.50 -0.1 543,559 + OH686_02550 0.68 +0.7 543,559 + OH686_02550 0.68 -0.8 543,559 + OH686_02550 0.68 +0.9 543,559 + OH686_02550 0.68 -0.4 543,560 - OH686_02550 0.68 -0.1 543,645 + OH686_02550 0.73 -0.5 543,645 + OH686_02550 0.73 +0.5 543,676 + OH686_02550 0.75 +0.3 543,676 + OH686_02550 0.75 +0.1 543,677 - OH686_02550 0.76 -0.3 543,796 + OH686_02550 0.84 -0.1 543,796 + OH686_02550 0.84 +0.2 543,796 + OH686_02550 0.84 -0.1 543,796 + OH686_02550 0.84 -1.4 543,797 - OH686_02550 0.84 +0.5 543,797 - OH686_02550 0.84 -1.2 543,797 - OH686_02550 0.84 -0.3 543,797 - OH686_02550 0.84 +0.4 543,797 - OH686_02550 0.84 -0.6 543,797 - OH686_02550 0.84 -0.0 543,895 + -0.4 543,895 + -0.6 543,896 - +0.2 543,896 - -0.8 543,896 - -0.9 544,054 - +0.7 544,054 - +0.5 544,077 - +0.6 544,077 - -0.5 544,077 - +0.7 544,077 - -0.9 544,090 + -0.2 544,090 + -0.8 544,090 + +0.0 544,090 + -1.0 544,090 + +0.2 544,090 + -0.5 544,090 + -0.1 544,090 + -0.6 544,090 + +0.4 544,090 + -0.1 544,090 + +0.1 544,091 - +0.3 544,091 - +0.1 544,091 - -0.1 544,091 - +0.6 544,091 - -0.9 544,091 - +0.0 544,091 - +0.3 544,091 - -0.0 544,091 - +0.0 544,337 - OH686_02555 0.33 +0.7 544,852 + +0.3 544,863 + +0.1 544,863 + -0.5 544,864 - -0.5 544,864 - -0.6 544,864 - +0.5 544,864 - +0.4 544,916 + -2.3 544,916 + -0.6 544,916 + -0.8 544,916 + -1.2 544,916 + -1.6 544,916 + -0.4 544,916 + +0.4 544,916 + +0.8 544,917 - +0.1 544,917 - -0.2 544,917 - +0.4 544,917 - -0.9 544,917 - +0.7 544,917 - -0.0 544,917 - +0.1 544,917 - -0.6 544,917 - +0.5 544,917 - +0.2 544,973 + -0.4
Or see this region's nucleotide sequence