Strain Fitness in Pseudomonas sp. S08-1 around OH686_01080

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01075 and OH686_01080 overlap by 4 nucleotidesOH686_01080 and OH686_01085 overlap by 1 nucleotidesOH686_01085 and OH686_01090 are separated by 104 nucleotides OH686_01075: OH686_01075 - Ferric hydroxamate ABC transporter, permease component FhuB, at 240,128 to 242,143 _01075 OH686_01080: OH686_01080 - hypothetical protein, at 242,140 to 242,997 _01080 OH686_01085: OH686_01085 - Ferric hydroxamate ABC transporter, ATP-binding protein FhuC, at 242,997 to 243,764 _01085 OH686_01090: OH686_01090 - hypothetical protein, at 243,869 to 244,363 _01090 Position (kb) 242 243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 241.184 kb on + strand, within OH686_01075at 241.334 kb on - strand, within OH686_01075at 241.377 kb on + strand, within OH686_01075at 241.377 kb on + strand, within OH686_01075at 241.377 kb on + strand, within OH686_01075at 241.378 kb on - strand, within OH686_01075at 241.378 kb on - strand, within OH686_01075at 241.378 kb on - strand, within OH686_01075at 241.378 kb on - strand, within OH686_01075at 241.378 kb on - strand, within OH686_01075at 241.573 kb on + strand, within OH686_01075at 241.574 kb on - strand, within OH686_01075at 241.635 kb on + strand, within OH686_01075at 241.635 kb on + strand, within OH686_01075at 241.635 kb on + strand, within OH686_01075at 241.635 kb on + strand, within OH686_01075at 241.636 kb on - strand, within OH686_01075at 241.636 kb on - strand, within OH686_01075at 241.636 kb on - strand, within OH686_01075at 242.237 kb on + strand, within OH686_01080at 242.237 kb on + strand, within OH686_01080at 242.237 kb on + strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.238 kb on - strand, within OH686_01080at 242.302 kb on + strand, within OH686_01080at 242.303 kb on - strand, within OH686_01080at 242.327 kb on + strand, within OH686_01080at 242.328 kb on - strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.390 kb on + strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.391 kb on - strand, within OH686_01080at 242.447 kb on + strand, within OH686_01080at 242.447 kb on + strand, within OH686_01080at 242.447 kb on + strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.448 kb on - strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.504 kb on + strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.505 kb on - strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.645 kb on + strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.646 kb on - strand, within OH686_01080at 242.665 kb on - strand, within OH686_01080at 242.665 kb on - strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.666 kb on + strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 242.667 kb on - strand, within OH686_01080at 243.061 kb on + strandat 243.061 kb on + strandat 243.061 kb on + strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.062 kb on - strandat 243.154 kb on + strand, within OH686_01085at 243.190 kb on - strand, within OH686_01085at 243.190 kb on - strand, within OH686_01085at 243.190 kb on - strand, within OH686_01085at 243.190 kb on - strand, within OH686_01085at 243.293 kb on - strand, within OH686_01085at 243.293 kb on - strand, within OH686_01085at 243.529 kb on + strand, within OH686_01085at 243.529 kb on + strand, within OH686_01085at 243.529 kb on + strand, within OH686_01085at 243.529 kb on + strand, within OH686_01085at 243.722 kb on + strandat 243.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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241,184 + OH686_01075 0.52 +0.3
241,334 - OH686_01075 0.60 -1.0
241,377 + OH686_01075 0.62 -0.1
241,377 + OH686_01075 0.62 +1.1
241,377 + OH686_01075 0.62 +0.2
241,378 - OH686_01075 0.62 -0.7
241,378 - OH686_01075 0.62 -0.4
241,378 - OH686_01075 0.62 -1.4
241,378 - OH686_01075 0.62 -0.4
241,378 - OH686_01075 0.62 -2.3
241,573 + OH686_01075 0.72 -0.1
241,574 - OH686_01075 0.72 -0.4
241,635 + OH686_01075 0.75 +0.9
241,635 + OH686_01075 0.75 +0.2
241,635 + OH686_01075 0.75 +0.6
241,635 + OH686_01075 0.75 -1.1
241,636 - OH686_01075 0.75 -0.9
241,636 - OH686_01075 0.75 -0.1
241,636 - OH686_01075 0.75 -0.5
242,237 + OH686_01080 0.11 -0.4
242,237 + OH686_01080 0.11 +0.1
242,237 + OH686_01080 0.11 -0.7
242,238 - OH686_01080 0.11 +0.2
242,238 - OH686_01080 0.11 -2.0
242,238 - OH686_01080 0.11 -1.0
242,238 - OH686_01080 0.11 -1.4
242,238 - OH686_01080 0.11 +1.4
242,238 - OH686_01080 0.11 +0.2
242,302 + OH686_01080 0.19 -0.1
242,303 - OH686_01080 0.19 +0.8
242,327 + OH686_01080 0.22 -1.1
242,328 - OH686_01080 0.22 -1.2
242,390 + OH686_01080 0.29 -1.1
242,390 + OH686_01080 0.29 +0.1
242,390 + OH686_01080 0.29 -0.3
242,390 + OH686_01080 0.29 -0.7
242,390 + OH686_01080 0.29 -0.4
242,390 + OH686_01080 0.29 +1.5
242,390 + OH686_01080 0.29 +1.8
242,391 - OH686_01080 0.29 -0.6
242,391 - OH686_01080 0.29 +1.1
242,391 - OH686_01080 0.29 +0.0
242,391 - OH686_01080 0.29 +0.1
242,391 - OH686_01080 0.29 -0.8
242,391 - OH686_01080 0.29 -0.8
242,447 + OH686_01080 0.36 -0.0
242,447 + OH686_01080 0.36 +0.6
242,447 + OH686_01080 0.36 +0.6
242,448 - OH686_01080 0.36 -1.4
242,448 - OH686_01080 0.36 -0.0
242,448 - OH686_01080 0.36 -0.3
242,448 - OH686_01080 0.36 +0.0
242,448 - OH686_01080 0.36 -0.3
242,448 - OH686_01080 0.36 -0.4
242,448 - OH686_01080 0.36 +0.1
242,448 - OH686_01080 0.36 -0.4
242,448 - OH686_01080 0.36 -1.8
242,504 + OH686_01080 0.42 +0.4
242,504 + OH686_01080 0.42 +1.8
242,504 + OH686_01080 0.42 -0.5
242,504 + OH686_01080 0.42 +0.6
242,504 + OH686_01080 0.42 +1.2
242,504 + OH686_01080 0.42 -1.0
242,504 + OH686_01080 0.42 +0.4
242,504 + OH686_01080 0.42 -0.0
242,505 - OH686_01080 0.43 -0.4
242,505 - OH686_01080 0.43 -0.2
242,505 - OH686_01080 0.43 +0.5
242,505 - OH686_01080 0.43 -0.5
242,505 - OH686_01080 0.43 -0.0
242,505 - OH686_01080 0.43 -0.2
242,505 - OH686_01080 0.43 +0.4
242,505 - OH686_01080 0.43 +0.8
242,505 - OH686_01080 0.43 -0.2
242,505 - OH686_01080 0.43 +0.3
242,505 - OH686_01080 0.43 +0.2
242,505 - OH686_01080 0.43 -0.9
242,645 + OH686_01080 0.59 +0.0
242,645 + OH686_01080 0.59 -0.6
242,645 + OH686_01080 0.59 +0.3
242,645 + OH686_01080 0.59 +0.2
242,645 + OH686_01080 0.59 +0.3
242,645 + OH686_01080 0.59 +0.1
242,645 + OH686_01080 0.59 +0.5
242,646 - OH686_01080 0.59 +0.2
242,646 - OH686_01080 0.59 +1.0
242,646 - OH686_01080 0.59 +0.5
242,646 - OH686_01080 0.59 +0.1
242,646 - OH686_01080 0.59 +0.3
242,646 - OH686_01080 0.59 +0.2
242,646 - OH686_01080 0.59 -1.8
242,665 - OH686_01080 0.61 -0.9
242,665 - OH686_01080 0.61 -0.9
242,666 + OH686_01080 0.61 +0.1
242,666 + OH686_01080 0.61 +1.5
242,666 + OH686_01080 0.61 +0.1
242,666 + OH686_01080 0.61 +0.1
242,666 + OH686_01080 0.61 -0.2
242,666 + OH686_01080 0.61 -0.4
242,666 + OH686_01080 0.61 -1.4
242,666 + OH686_01080 0.61 +2.8
242,666 + OH686_01080 0.61 -0.0
242,666 + OH686_01080 0.61 -1.2
242,666 + OH686_01080 0.61 +0.3
242,666 + OH686_01080 0.61 +0.1
242,666 + OH686_01080 0.61 -1.9
242,666 + OH686_01080 0.61 -0.4
242,666 + OH686_01080 0.61 -1.8
242,666 + OH686_01080 0.61 +0.9
242,666 + OH686_01080 0.61 +0.3
242,666 + OH686_01080 0.61 -0.1
242,666 + OH686_01080 0.61 +0.2
242,666 + OH686_01080 0.61 -0.2
242,666 + OH686_01080 0.61 +0.0
242,666 + OH686_01080 0.61 +0.2
242,666 + OH686_01080 0.61 +0.7
242,666 + OH686_01080 0.61 +0.1
242,667 - OH686_01080 0.61 -0.6
242,667 - OH686_01080 0.61 +0.7
242,667 - OH686_01080 0.61 +0.8
242,667 - OH686_01080 0.61 +0.8
242,667 - OH686_01080 0.61 -0.3
242,667 - OH686_01080 0.61 +0.3
242,667 - OH686_01080 0.61 -0.2
242,667 - OH686_01080 0.61 -0.5
242,667 - OH686_01080 0.61 -0.6
242,667 - OH686_01080 0.61 -1.0
242,667 - OH686_01080 0.61 -0.7
242,667 - OH686_01080 0.61 -0.6
242,667 - OH686_01080 0.61 -0.5
242,667 - OH686_01080 0.61 +0.7
242,667 - OH686_01080 0.61 -1.1
242,667 - OH686_01080 0.61 -0.7
242,667 - OH686_01080 0.61 -0.1
242,667 - OH686_01080 0.61 +0.3
242,667 - OH686_01080 0.61 +0.5
242,667 - OH686_01080 0.61 -0.1
242,667 - OH686_01080 0.61 -1.4
242,667 - OH686_01080 0.61 -0.2
242,667 - OH686_01080 0.61 -0.5
242,667 - OH686_01080 0.61 -1.2
242,667 - OH686_01080 0.61 +0.5
242,667 - OH686_01080 0.61 +0.6
242,667 - OH686_01080 0.61 +0.6
242,667 - OH686_01080 0.61 -0.8
243,061 + -0.1
243,061 + -2.2
243,061 + -0.4
243,062 - -1.2
243,062 - -0.1
243,062 - -1.5
243,062 - -0.4
243,062 - -0.9
243,062 - +0.1
243,062 - +0.1
243,154 + OH686_01085 0.20 -1.0
243,190 - OH686_01085 0.25 -0.8
243,190 - OH686_01085 0.25 -0.8
243,190 - OH686_01085 0.25 +0.7
243,190 - OH686_01085 0.25 -0.7
243,293 - OH686_01085 0.39 -0.3
243,293 - OH686_01085 0.39 -0.3
243,529 + OH686_01085 0.69 -0.1
243,529 + OH686_01085 0.69 -0.5
243,529 + OH686_01085 0.69 +0.9
243,529 + OH686_01085 0.69 -0.3
243,722 + -0.3
243,722 + +0.9

Or see this region's nucleotide sequence