Strain Fitness in Pseudomonas sp. S08-1 around OH686_00840

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00835 and OH686_00840 are separated by 29 nucleotidesOH686_00840 and OH686_00845 overlap by 4 nucleotidesOH686_00845 and OH686_00850 are separated by 3 nucleotides OH686_00835: OH686_00835 - Hydroxymethylglutaryl-CoA lyase , at 165,293 to 166,195 _00835 OH686_00840: OH686_00840 - Methylcrotonyl-CoA carboxylase biotin-containing subunit , at 166,225 to 168,174 _00840 OH686_00845: OH686_00845 - Methylglutaconyl-CoA hydratase , at 168,171 to 168,971 _00845 OH686_00850: OH686_00850 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit , at 168,975 to 170,582 _00850 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.227 kb on + strandat 165.243 kb on + strandat 165.244 kb on - strandat 165.566 kb on - strand, within OH686_00835at 166.243 kb on + strandat 166.243 kb on + strandat 166.286 kb on + strandat 166.287 kb on - strandat 166.300 kb on + strandat 166.300 kb on + strandat 166.301 kb on - strandat 166.301 kb on - strandat 166.301 kb on - strandat 166.520 kb on + strand, within OH686_00840at 166.520 kb on + strand, within OH686_00840at 166.520 kb on + strand, within OH686_00840at 166.520 kb on + strand, within OH686_00840at 166.520 kb on + strand, within OH686_00840at 166.521 kb on - strand, within OH686_00840at 166.521 kb on - strand, within OH686_00840at 166.521 kb on - strand, within OH686_00840at 166.521 kb on - strand, within OH686_00840at 166.551 kb on - strand, within OH686_00840at 166.721 kb on + strand, within OH686_00840at 166.721 kb on + strand, within OH686_00840at 166.721 kb on + strand, within OH686_00840at 166.721 kb on + strand, within OH686_00840at 166.721 kb on + strand, within OH686_00840at 166.722 kb on - strand, within OH686_00840at 166.839 kb on + strand, within OH686_00840at 166.840 kb on - strand, within OH686_00840at 167.015 kb on + strand, within OH686_00840at 167.015 kb on + strand, within OH686_00840at 167.015 kb on + strand, within OH686_00840at 167.015 kb on + strand, within OH686_00840at 167.015 kb on + strand, within OH686_00840at 167.016 kb on - strand, within OH686_00840at 167.016 kb on - strand, within OH686_00840at 167.016 kb on - strand, within OH686_00840at 167.044 kb on + strand, within OH686_00840at 167.044 kb on + strand, within OH686_00840at 167.045 kb on - strand, within OH686_00840at 167.045 kb on - strand, within OH686_00840at 167.045 kb on - strand, within OH686_00840at 167.045 kb on - strand, within OH686_00840at 167.090 kb on + strand, within OH686_00840at 167.091 kb on - strand, within OH686_00840at 167.091 kb on - strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.092 kb on + strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.093 kb on - strand, within OH686_00840at 167.292 kb on + strand, within OH686_00840at 167.292 kb on + strand, within OH686_00840at 167.292 kb on + strand, within OH686_00840at 167.292 kb on + strand, within OH686_00840at 167.292 kb on + strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.293 kb on - strand, within OH686_00840at 167.305 kb on - strand, within OH686_00840at 167.305 kb on - strand, within OH686_00840at 167.360 kb on + strand, within OH686_00840at 167.361 kb on - strand, within OH686_00840at 167.495 kb on + strand, within OH686_00840at 167.495 kb on + strand, within OH686_00840at 167.496 kb on - strand, within OH686_00840at 167.496 kb on - strand, within OH686_00840at 167.496 kb on - strand, within OH686_00840at 167.496 kb on - strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.558 kb on + strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.559 kb on - strand, within OH686_00840at 167.762 kb on + strand, within OH686_00840at 167.984 kb on + strandat 167.984 kb on + strandat 167.984 kb on + strandat 167.984 kb on + strandat 167.984 kb on + strandat 167.984 kb on + strandat 167.985 kb on - strandat 167.985 kb on - strandat 167.985 kb on - strandat 167.985 kb on - strandat 167.985 kb on - strandat 167.985 kb on - strandat 167.985 kb on - strandat 168.277 kb on + strand, within OH686_00845at 168.415 kb on + strand, within OH686_00845at 168.482 kb on - strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.688 kb on + strand, within OH686_00845at 168.689 kb on - strand, within OH686_00845at 168.689 kb on - strand, within OH686_00845at 168.689 kb on - strand, within OH686_00845at 168.689 kb on - strand, within OH686_00845at 168.733 kb on + strand, within OH686_00845at 168.733 kb on + strand, within OH686_00845at 168.734 kb on - strand, within OH686_00845at 168.734 kb on - strand, within OH686_00845at 168.734 kb on - strand, within OH686_00845at 168.951 kb on + strandat 168.952 kb on - strandat 168.952 kb on - strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.976 kb on + strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.977 kb on - strandat 168.988 kb on - strandat 169.048 kb on - strandat 169.048 kb on - strandat 169.105 kb on + strandat 169.105 kb on + strandat 169.105 kb on + strandat 169.105 kb on + strandat 169.105 kb on + strandat 169.106 kb on - strandat 169.106 kb on - strandat 169.106 kb on - strandat 169.106 kb on - strandat 169.106 kb on - strandat 169.106 kb on - strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.108 kb on + strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strandat 169.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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165,227 + +0.1
165,243 + -0.5
165,244 - -0.2
165,566 - OH686_00835 0.30 -0.2
166,243 + -1.4
166,243 + -1.7
166,286 + -2.7
166,287 - -0.8
166,300 + -2.1
166,300 + -1.3
166,301 - -1.2
166,301 - -0.5
166,301 - +0.1
166,520 + OH686_00840 0.15 +0.2
166,520 + OH686_00840 0.15 +1.3
166,520 + OH686_00840 0.15 -1.4
166,520 + OH686_00840 0.15 -1.7
166,520 + OH686_00840 0.15 -1.2
166,521 - OH686_00840 0.15 +0.5
166,521 - OH686_00840 0.15 -0.1
166,521 - OH686_00840 0.15 -0.7
166,521 - OH686_00840 0.15 -0.5
166,551 - OH686_00840 0.17 -1.7
166,721 + OH686_00840 0.25 -1.5
166,721 + OH686_00840 0.25 -0.5
166,721 + OH686_00840 0.25 -1.1
166,721 + OH686_00840 0.25 -1.6
166,721 + OH686_00840 0.25 -0.5
166,722 - OH686_00840 0.25 -0.6
166,839 + OH686_00840 0.31 -1.5
166,840 - OH686_00840 0.32 -1.8
167,015 + OH686_00840 0.41 -0.0
167,015 + OH686_00840 0.41 -0.8
167,015 + OH686_00840 0.41 +1.1
167,015 + OH686_00840 0.41 -1.2
167,015 + OH686_00840 0.41 -0.8
167,016 - OH686_00840 0.41 +1.1
167,016 - OH686_00840 0.41 -0.9
167,016 - OH686_00840 0.41 -2.3
167,044 + OH686_00840 0.42 -0.2
167,044 + OH686_00840 0.42 -0.1
167,045 - OH686_00840 0.42 -0.5
167,045 - OH686_00840 0.42 -1.2
167,045 - OH686_00840 0.42 +0.9
167,045 - OH686_00840 0.42 -0.2
167,090 + OH686_00840 0.44 -0.2
167,091 - OH686_00840 0.44 +0.1
167,091 - OH686_00840 0.44 -0.5
167,092 + OH686_00840 0.44 -0.8
167,092 + OH686_00840 0.44 -1.3
167,092 + OH686_00840 0.44 -0.0
167,092 + OH686_00840 0.44 +0.8
167,092 + OH686_00840 0.44 -1.5
167,092 + OH686_00840 0.44 -1.0
167,092 + OH686_00840 0.44 -1.0
167,092 + OH686_00840 0.44 +1.2
167,092 + OH686_00840 0.44 -0.2
167,092 + OH686_00840 0.44 -1.0
167,092 + OH686_00840 0.44 -0.9
167,093 - OH686_00840 0.45 -1.5
167,093 - OH686_00840 0.45 -1.1
167,093 - OH686_00840 0.45 -1.8
167,093 - OH686_00840 0.45 +0.8
167,093 - OH686_00840 0.45 -0.0
167,093 - OH686_00840 0.45 -0.2
167,093 - OH686_00840 0.45 -0.8
167,093 - OH686_00840 0.45 -0.2
167,093 - OH686_00840 0.45 -1.0
167,093 - OH686_00840 0.45 -2.3
167,292 + OH686_00840 0.55 +0.5
167,292 + OH686_00840 0.55 -2.0
167,292 + OH686_00840 0.55 +1.1
167,292 + OH686_00840 0.55 -1.8
167,292 + OH686_00840 0.55 -0.2
167,293 - OH686_00840 0.55 -0.5
167,293 - OH686_00840 0.55 -1.9
167,293 - OH686_00840 0.55 -2.0
167,293 - OH686_00840 0.55 -0.7
167,293 - OH686_00840 0.55 -0.2
167,293 - OH686_00840 0.55 +0.8
167,305 - OH686_00840 0.55 -0.2
167,305 - OH686_00840 0.55 +0.8
167,360 + OH686_00840 0.58 -1.7
167,361 - OH686_00840 0.58 -1.0
167,495 + OH686_00840 0.65 +0.2
167,495 + OH686_00840 0.65 +1.4
167,496 - OH686_00840 0.65 -0.2
167,496 - OH686_00840 0.65 -0.6
167,496 - OH686_00840 0.65 +2.4
167,496 - OH686_00840 0.65 -0.8
167,558 + OH686_00840 0.68 -1.5
167,558 + OH686_00840 0.68 +0.2
167,558 + OH686_00840 0.68 -0.4
167,558 + OH686_00840 0.68 -1.6
167,558 + OH686_00840 0.68 -1.0
167,558 + OH686_00840 0.68 -1.7
167,558 + OH686_00840 0.68 -1.1
167,558 + OH686_00840 0.68 -1.0
167,559 - OH686_00840 0.68 -2.7
167,559 - OH686_00840 0.68 -0.1
167,559 - OH686_00840 0.68 -2.0
167,559 - OH686_00840 0.68 -0.8
167,559 - OH686_00840 0.68 +0.3
167,559 - OH686_00840 0.68 -2.0
167,762 + OH686_00840 0.79 -0.7
167,984 + -0.5
167,984 + -1.1
167,984 + -1.3
167,984 + +0.2
167,984 + -1.8
167,984 + +0.6
167,985 - -0.9
167,985 - +0.1
167,985 - -0.0
167,985 - -0.8
167,985 - -1.2
167,985 - -1.1
167,985 - -0.5
168,277 + OH686_00845 0.13 -1.9
168,415 + OH686_00845 0.30 -1.6
168,482 - OH686_00845 0.39 -0.0
168,688 + OH686_00845 0.65 -0.1
168,688 + OH686_00845 0.65 -1.2
168,688 + OH686_00845 0.65 -0.8
168,688 + OH686_00845 0.65 +0.1
168,688 + OH686_00845 0.65 -0.6
168,688 + OH686_00845 0.65 -0.1
168,688 + OH686_00845 0.65 +0.0
168,688 + OH686_00845 0.65 +0.5
168,688 + OH686_00845 0.65 +0.8
168,688 + OH686_00845 0.65 -1.4
168,688 + OH686_00845 0.65 -2.5
168,689 - OH686_00845 0.65 +0.2
168,689 - OH686_00845 0.65 +0.8
168,689 - OH686_00845 0.65 -1.9
168,689 - OH686_00845 0.65 -1.7
168,733 + OH686_00845 0.70 -1.0
168,733 + OH686_00845 0.70 +0.5
168,734 - OH686_00845 0.70 -0.5
168,734 - OH686_00845 0.70 -1.2
168,734 - OH686_00845 0.70 -2.0
168,951 + -0.1
168,952 - -0.0
168,952 - -0.8
168,976 + -0.4
168,976 + -1.1
168,976 + -0.2
168,976 + -0.8
168,976 + -2.1
168,976 + -2.9
168,976 + -0.5
168,976 + +0.2
168,976 + +0.6
168,976 + -1.3
168,977 - -0.8
168,977 - -1.1
168,977 - +0.6
168,977 - -0.2
168,977 - +1.8
168,977 - -0.7
168,977 - +1.5
168,977 - +0.5
168,977 - +0.8
168,977 - +0.2
168,977 - +0.5
168,988 - -1.3
169,048 - -0.8
169,048 - -1.0
169,105 + +1.1
169,105 + -1.1
169,105 + -1.4
169,105 + -0.8
169,105 + -0.5
169,106 - -0.2
169,106 - -1.2
169,106 - -0.2
169,106 - +0.2
169,106 - -0.8
169,106 - -1.2
169,108 + -0.1
169,108 + +0.1
169,108 + -1.7
169,108 + -1.8
169,108 + -1.2
169,108 + -0.8
169,108 + -1.2
169,108 + -0.5
169,109 - -1.6
169,109 - -1.0
169,109 - +0.8
169,109 - +0.0
169,109 - -2.2
169,109 - +1.4
169,109 - -1.2
169,109 - -0.2
169,109 - -0.8
169,109 - -0.2
169,109 - -1.0

Or see this region's nucleotide sequence