Strain Fitness in Pseudomonas simiae WCS417 around PS417_03200

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03195 and PS417_03200 are separated by 137 nucleotidesPS417_03200 and PS417_03205 are separated by 24 nucleotides PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815 _03195 PS417_03200: PS417_03200 - ArsR family transcriptional regulator, at 731,953 to 732,642 _03200 PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620 _03205 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1at 731.024 kb on - strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.465 kb on + strand, within PS417_03195at 731.466 kb on - strand, within PS417_03195at 731.466 kb on - strand, within PS417_03195at 731.466 kb on - strand, within PS417_03195at 731.466 kb on - strand, within PS417_03195at 731.467 kb on + strand, within PS417_03195at 731.468 kb on - strand, within PS417_03195at 731.468 kb on - strand, within PS417_03195at 731.468 kb on - strand, within PS417_03195at 731.606 kb on + strand, within PS417_03195at 731.607 kb on - strand, within PS417_03195at 731.813 kb on + strandat 731.863 kb on - strandat 731.902 kb on - strandat 731.903 kb on + strandat 731.904 kb on - strandat 731.904 kb on - strandat 731.916 kb on - strandat 732.288 kb on - strand, within PS417_03200at 732.344 kb on - strand, within PS417_03200at 732.471 kb on + strand, within PS417_03200at 732.472 kb on - strand, within PS417_03200at 732.472 kb on - strand, within PS417_03200at 732.472 kb on - strandat 732.645 kb on + strandat 732.645 kb on + strandat 732.646 kb on - strandat 732.646 kb on - strandat 732.646 kb on - strandat 732.669 kb on - strandat 732.677 kb on - strandat 732.773 kb on + strand, within PS417_03205at 733.013 kb on + strand, within PS417_03205at 733.014 kb on - strand, within PS417_03205at 733.397 kb on + strand, within PS417_03205at 733.397 kb on + strand, within PS417_03205at 733.397 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.436 kb on + strand, within PS417_03205at 733.437 kb on - strand, within PS417_03205at 733.437 kb on - strand, within PS417_03205at 733.439 kb on + strand, within PS417_03205at 733.440 kb on - strand, within PS417_03205at 733.464 kb on + strand, within PS417_03205at 733.476 kb on - strand, within PS417_03205

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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731,024 - PS417_03195 0.15 -0.2
731,465 + PS417_03195 0.62 +0.4
731,465 + PS417_03195 0.62 -0.1
731,465 + PS417_03195 0.62 -0.3
731,465 + PS417_03195 0.62 +0.1
731,465 + PS417_03195 0.62 +0.3
731,465 + PS417_03195 0.62 +0.4
731,465 + PS417_03195 0.62 -0.7
731,466 - PS417_03195 0.62 -0.8
731,466 - PS417_03195 0.62 -0.2
731,466 - PS417_03195 0.62 +0.1
731,466 - PS417_03195 0.62 +1.2
731,467 + PS417_03195 0.62 -0.2
731,468 - PS417_03195 0.62 -0.1
731,468 - PS417_03195 0.62 +0.9
731,468 - PS417_03195 0.62 +0.2
731,606 + PS417_03195 0.77 -0.6
731,607 - PS417_03195 0.77 +0.3
731,813 + +0.5
731,863 - -0.5
731,902 - -0.7
731,903 + -0.1
731,904 - +0.6
731,904 - +0.2
731,916 - -1.9
732,288 - PS417_03200 0.49 +0.9
732,344 - PS417_03200 0.57 +0.3
732,471 + PS417_03200 0.75 -0.3
732,472 - PS417_03200 0.75 -0.8
732,472 - PS417_03200 0.75 +0.8
732,472 - -0.4
732,645 + -0.4
732,645 + +0.1
732,646 - -0.0
732,646 - +0.8
732,646 - +0.6
732,669 - -0.0
732,677 - +0.2
732,773 + PS417_03205 0.11 +1.2
733,013 + PS417_03205 0.36 +0.1
733,014 - PS417_03205 0.36 -0.4
733,397 + PS417_03205 0.77 -2.3
733,397 + PS417_03205 0.77 +0.4
733,397 + PS417_03205 0.77 +0.6
733,436 + PS417_03205 0.81 +0.6
733,436 + PS417_03205 0.81 +0.4
733,436 + PS417_03205 0.81 -2.2
733,436 + PS417_03205 0.81 +0.0
733,436 + PS417_03205 0.81 -1.6
733,436 + PS417_03205 0.81 -0.1
733,436 + PS417_03205 0.81 -0.6
733,437 - PS417_03205 0.81 +0.9
733,437 - PS417_03205 0.81 -0.1
733,439 + PS417_03205 0.81 +0.5
733,440 - PS417_03205 0.81 +1.2
733,464 + PS417_03205 0.84 -0.3
733,476 - PS417_03205 0.85 -0.1

Or see this region's nucleotide sequence