Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1537

Experiment: m.b. Chlorite 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1536 and Echvi_1537 are separated by 98 nucleotidesEchvi_1537 and Echvi_1538 are separated by 66 nucleotides Echvi_1536: Echvi_1536 - phosphatidylserine decarboxylase precursor-related protein, at 1,760,532 to 1,761,194 _1536 Echvi_1537: Echvi_1537 - hypothetical protein, at 1,761,293 to 1,761,730 _1537 Echvi_1538: Echvi_1538 - hypothetical protein, at 1,761,797 to 1,763,128 _1538 Position (kb) 1761 1762Strain fitness (log2 ratio) -2 -1 0 1at 1760.296 kb on + strandat 1760.296 kb on + strandat 1760.296 kb on + strandat 1760.323 kb on - strandat 1760.350 kb on + strandat 1760.350 kb on + strandat 1760.391 kb on + strandat 1760.392 kb on - strandat 1760.393 kb on + strandat 1760.473 kb on - strandat 1760.509 kb on + strandat 1761.192 kb on + strandat 1761.310 kb on + strandat 1761.312 kb on + strandat 1761.420 kb on - strand, within Echvi_1537at 1761.435 kb on - strand, within Echvi_1537at 1761.435 kb on - strand, within Echvi_1537at 1761.459 kb on + strand, within Echvi_1537at 1761.460 kb on - strand, within Echvi_1537at 1761.462 kb on + strand, within Echvi_1537at 1761.463 kb on - strand, within Echvi_1537at 1761.463 kb on - strand, within Echvi_1537at 1761.490 kb on + strand, within Echvi_1537at 1761.491 kb on - strand, within Echvi_1537at 1761.492 kb on + strand, within Echvi_1537at 1761.492 kb on + strand, within Echvi_1537at 1761.492 kb on + strand, within Echvi_1537at 1761.492 kb on + strand, within Echvi_1537at 1761.493 kb on - strand, within Echvi_1537at 1761.516 kb on + strand, within Echvi_1537at 1761.517 kb on - strand, within Echvi_1537at 1761.517 kb on - strand, within Echvi_1537at 1761.643 kb on - strand, within Echvi_1537at 1761.643 kb on - strand, within Echvi_1537at 1761.723 kb on + strandat 1761.723 kb on + strandat 1761.738 kb on + strandat 1761.768 kb on + strandat 1761.778 kb on + strandat 1761.779 kb on - strandat 1761.859 kb on + strandat 1761.898 kb on - strandat 1761.902 kb on - strandat 1761.902 kb on - strandat 1761.902 kb on - strandat 1761.934 kb on - strand, within Echvi_1538at 1761.994 kb on - strand, within Echvi_1538at 1762.052 kb on + strand, within Echvi_1538at 1762.053 kb on - strand, within Echvi_1538at 1762.053 kb on - strand, within Echvi_1538at 1762.053 kb on - strand, within Echvi_1538at 1762.121 kb on + strand, within Echvi_1538at 1762.121 kb on + strand, within Echvi_1538at 1762.121 kb on + strand, within Echvi_1538at 1762.127 kb on - strand, within Echvi_1538at 1762.128 kb on + strand, within Echvi_1538at 1762.143 kb on + strand, within Echvi_1538at 1762.153 kb on + strand, within Echvi_1538at 1762.154 kb on - strand, within Echvi_1538at 1762.167 kb on - strand, within Echvi_1538at 1762.167 kb on - strand, within Echvi_1538at 1762.167 kb on - strand, within Echvi_1538at 1762.191 kb on - strand, within Echvi_1538at 1762.221 kb on - strand, within Echvi_1538at 1762.221 kb on - strand, within Echvi_1538at 1762.237 kb on - strand, within Echvi_1538at 1762.237 kb on - strand, within Echvi_1538at 1762.330 kb on + strand, within Echvi_1538at 1762.330 kb on + strand, within Echvi_1538at 1762.331 kb on - strand, within Echvi_1538at 1762.331 kb on - strand, within Echvi_1538at 1762.331 kb on - strand, within Echvi_1538at 1762.444 kb on - strand, within Echvi_1538at 1762.444 kb on - strand, within Echvi_1538at 1762.444 kb on - strand, within Echvi_1538at 1762.444 kb on - strand, within Echvi_1538at 1762.448 kb on + strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.449 kb on - strand, within Echvi_1538at 1762.463 kb on - strand, within Echvi_1538at 1762.463 kb on - strand, within Echvi_1538at 1762.534 kb on + strand, within Echvi_1538at 1762.534 kb on + strand, within Echvi_1538at 1762.534 kb on + strand, within Echvi_1538at 1762.534 kb on + strand, within Echvi_1538at 1762.534 kb on + strand, within Echvi_1538at 1762.535 kb on - strand, within Echvi_1538at 1762.640 kb on + strand, within Echvi_1538

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.05 mM
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1,760,296 + +0.6
1,760,296 + -1.3
1,760,296 + -0.3
1,760,323 - -0.4
1,760,350 + +0.4
1,760,350 + +0.3
1,760,391 + +0.3
1,760,392 - +0.4
1,760,393 + +0.2
1,760,473 - +0.4
1,760,509 + +1.1
1,761,192 + +1.2
1,761,310 + +0.6
1,761,312 + -0.0
1,761,420 - Echvi_1537 0.29 -0.6
1,761,435 - Echvi_1537 0.32 +1.0
1,761,435 - Echvi_1537 0.32 +1.2
1,761,459 + Echvi_1537 0.38 -0.9
1,761,460 - Echvi_1537 0.38 +1.6
1,761,462 + Echvi_1537 0.39 +0.4
1,761,463 - Echvi_1537 0.39 +0.3
1,761,463 - Echvi_1537 0.39 -2.0
1,761,490 + Echvi_1537 0.45 +1.4
1,761,491 - Echvi_1537 0.45 -1.9
1,761,492 + Echvi_1537 0.45 +1.2
1,761,492 + Echvi_1537 0.45 -0.7
1,761,492 + Echvi_1537 0.45 -1.8
1,761,492 + Echvi_1537 0.45 +0.4
1,761,493 - Echvi_1537 0.46 -1.3
1,761,516 + Echvi_1537 0.51 +0.3
1,761,517 - Echvi_1537 0.51 -0.6
1,761,517 - Echvi_1537 0.51 -0.1
1,761,643 - Echvi_1537 0.80 +0.0
1,761,643 - Echvi_1537 0.80 +1.6
1,761,723 + -0.6
1,761,723 + -0.6
1,761,738 + -1.2
1,761,768 + -0.9
1,761,778 + -0.1
1,761,779 - -1.4
1,761,859 + -0.2
1,761,898 - +0.2
1,761,902 - +0.4
1,761,902 - +1.0
1,761,902 - -0.5
1,761,934 - Echvi_1538 0.10 +0.2
1,761,994 - Echvi_1538 0.15 +0.3
1,762,052 + Echvi_1538 0.19 -0.4
1,762,053 - Echvi_1538 0.19 +0.6
1,762,053 - Echvi_1538 0.19 -1.3
1,762,053 - Echvi_1538 0.19 +0.7
1,762,121 + Echvi_1538 0.24 -0.3
1,762,121 + Echvi_1538 0.24 +1.0
1,762,121 + Echvi_1538 0.24 +1.0
1,762,127 - Echvi_1538 0.25 +0.5
1,762,128 + Echvi_1538 0.25 +1.5
1,762,143 + Echvi_1538 0.26 +0.0
1,762,153 + Echvi_1538 0.27 -0.3
1,762,154 - Echvi_1538 0.27 -1.5
1,762,167 - Echvi_1538 0.28 -0.1
1,762,167 - Echvi_1538 0.28 +0.8
1,762,167 - Echvi_1538 0.28 +0.1
1,762,191 - Echvi_1538 0.30 -0.1
1,762,221 - Echvi_1538 0.32 +0.0
1,762,221 - Echvi_1538 0.32 -0.4
1,762,237 - Echvi_1538 0.33 -1.7
1,762,237 - Echvi_1538 0.33 -0.7
1,762,330 + Echvi_1538 0.40 -1.6
1,762,330 + Echvi_1538 0.40 +0.3
1,762,331 - Echvi_1538 0.40 -0.6
1,762,331 - Echvi_1538 0.40 +0.1
1,762,331 - Echvi_1538 0.40 +0.7
1,762,444 - Echvi_1538 0.49 -0.2
1,762,444 - Echvi_1538 0.49 -0.6
1,762,444 - Echvi_1538 0.49 -0.5
1,762,444 - Echvi_1538 0.49 +0.4
1,762,448 + Echvi_1538 0.49 +0.1
1,762,449 - Echvi_1538 0.49 +0.1
1,762,449 - Echvi_1538 0.49 -0.7
1,762,449 - Echvi_1538 0.49 -0.8
1,762,449 - Echvi_1538 0.49 +0.3
1,762,449 - Echvi_1538 0.49 +0.1
1,762,449 - Echvi_1538 0.49 +0.2
1,762,463 - Echvi_1538 0.50 -0.5
1,762,463 - Echvi_1538 0.50 +0.1
1,762,534 + Echvi_1538 0.55 +1.1
1,762,534 + Echvi_1538 0.55 -0.8
1,762,534 + Echvi_1538 0.55 +0.2
1,762,534 + Echvi_1538 0.55 -0.4
1,762,534 + Echvi_1538 0.55 -0.4
1,762,535 - Echvi_1538 0.55 -0.1
1,762,640 + Echvi_1538 0.63 +0.5

Or see this region's nucleotide sequence