Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4504

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4502 and EX28DRAFT_4503 are separated by 2 nucleotidesEX28DRAFT_4503 and EX28DRAFT_4504 are separated by 41 nucleotidesEX28DRAFT_4504 and EX28DRAFT_4505 overlap by 4 nucleotidesEX28DRAFT_4505 and EX28DRAFT_4506 are separated by 170 nucleotides EX28DRAFT_4502: EX28DRAFT_4502 - twin arginine-targeting protein translocase TatB, at 68,954 to 69,496 _4502 EX28DRAFT_4503: EX28DRAFT_4503 - Twin arginine targeting (Tat) protein translocase TatC, at 69,499 to 70,269 _4503 EX28DRAFT_4504: EX28DRAFT_4504 - Mg-dependent DNase, at 70,311 to 71,093 _4504 EX28DRAFT_4505: EX28DRAFT_4505 - transcription elongation factor/antiterminator RfaH, at 71,090 to 71,581 _4505 EX28DRAFT_4506: EX28DRAFT_4506 - UbiD family decarboxylase, at 71,752 to 73,245 _4506 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.494 kb on + strandat 69.506 kb on + strandat 69.506 kb on + strandat 69.506 kb on + strandat 69.507 kb on - strandat 69.507 kb on - strandat 69.507 kb on - strandat 69.622 kb on + strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.798 kb on + strand, within EX28DRAFT_4503at 69.799 kb on - strand, within EX28DRAFT_4503at 69.853 kb on + strand, within EX28DRAFT_4503at 70.068 kb on + strand, within EX28DRAFT_4503at 70.081 kb on + strand, within EX28DRAFT_4503at 70.082 kb on - strand, within EX28DRAFT_4503at 70.082 kb on - strand, within EX28DRAFT_4503at 70.083 kb on + strand, within EX28DRAFT_4503at 70.084 kb on - strand, within EX28DRAFT_4503at 70.166 kb on - strand, within EX28DRAFT_4503at 70.188 kb on - strand, within EX28DRAFT_4503at 70.205 kb on - strandat 70.242 kb on + strandat 70.242 kb on + strandat 70.296 kb on + strandat 70.296 kb on + strandat 70.296 kb on + strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.605 kb on - strand, within EX28DRAFT_4504at 70.685 kb on + strand, within EX28DRAFT_4504at 70.818 kb on + strand, within EX28DRAFT_4504at 70.927 kb on - strand, within EX28DRAFT_4504at 70.944 kb on - strand, within EX28DRAFT_4504at 70.983 kb on + strand, within EX28DRAFT_4504at 71.092 kb on - strandat 71.116 kb on + strandat 71.130 kb on - strandat 71.161 kb on + strand, within EX28DRAFT_4505at 71.162 kb on - strand, within EX28DRAFT_4505at 71.162 kb on - strand, within EX28DRAFT_4505at 71.225 kb on - strand, within EX28DRAFT_4505at 71.286 kb on + strand, within EX28DRAFT_4505at 71.286 kb on + strand, within EX28DRAFT_4505at 71.422 kb on - strand, within EX28DRAFT_4505at 71.565 kb on - strandat 71.569 kb on - strandat 71.581 kb on + strandat 71.581 kb on + strandat 71.582 kb on - strandat 71.582 kb on - strandat 71.647 kb on + strandat 71.648 kb on - strandat 71.650 kb on - strandat 71.727 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
69,494 + -0.1
69,506 + -1.1
69,506 + -0.5
69,506 + +0.4
69,507 - -2.9
69,507 - +0.0
69,507 - -1.2
69,622 + EX28DRAFT_4503 0.16 +0.4
69,623 - EX28DRAFT_4503 0.16 -1.7
69,623 - EX28DRAFT_4503 0.16 -2.0
69,623 - EX28DRAFT_4503 0.16 -1.9
69,798 + EX28DRAFT_4503 0.39 -0.1
69,799 - EX28DRAFT_4503 0.39 -0.7
69,853 + EX28DRAFT_4503 0.46 -0.8
70,068 + EX28DRAFT_4503 0.74 +0.0
70,081 + EX28DRAFT_4503 0.75 -0.3
70,082 - EX28DRAFT_4503 0.76 -0.9
70,082 - EX28DRAFT_4503 0.76 +0.3
70,083 + EX28DRAFT_4503 0.76 +1.0
70,084 - EX28DRAFT_4503 0.76 -0.2
70,166 - EX28DRAFT_4503 0.87 -0.4
70,188 - EX28DRAFT_4503 0.89 +2.4
70,205 - -0.5
70,242 + -0.1
70,242 + -0.8
70,296 + -0.2
70,296 + +0.6
70,296 + +0.1
70,297 - +1.1
70,297 - +0.5
70,297 - +1.3
70,297 - +0.3
70,605 - EX28DRAFT_4504 0.38 +0.4
70,685 + EX28DRAFT_4504 0.48 +0.2
70,818 + EX28DRAFT_4504 0.65 +0.6
70,927 - EX28DRAFT_4504 0.79 -0.4
70,944 - EX28DRAFT_4504 0.81 +0.8
70,983 + EX28DRAFT_4504 0.86 -0.1
71,092 - +0.0
71,116 + -0.7
71,130 - -0.1
71,161 + EX28DRAFT_4505 0.14 +0.1
71,162 - EX28DRAFT_4505 0.15 +1.0
71,162 - EX28DRAFT_4505 0.15 -1.4
71,225 - EX28DRAFT_4505 0.27 +0.2
71,286 + EX28DRAFT_4505 0.40 -1.5
71,286 + EX28DRAFT_4505 0.40 -0.3
71,422 - EX28DRAFT_4505 0.67 +0.3
71,565 - +0.3
71,569 - +1.4
71,581 + -0.7
71,581 + -0.2
71,582 - +0.7
71,582 - +0.9
71,647 + -0.6
71,648 - +0.5
71,650 - +0.4
71,727 - -0.0

Or see this region's nucleotide sequence