Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4500 and EX28DRAFT_4501 are separated by 76 nucleotides EX28DRAFT_4501 and EX28DRAFT_4502 are separated by 3 nucleotides EX28DRAFT_4502 and EX28DRAFT_4503 are separated by 2 nucleotides EX28DRAFT_4503 and EX28DRAFT_4504 are separated by 41 nucleotides EX28DRAFT_4504 and EX28DRAFT_4505 overlap by 4 nucleotides
EX28DRAFT_4500: EX28DRAFT_4500 - 2-octaprenylphenol hydroxylase (EC 1.14.13.-), at 66,979 to 68,619
_4500
EX28DRAFT_4501: EX28DRAFT_4501 - twin arginine-targeting protein translocase, TatA/E family, at 68,696 to 68,950
_4501
EX28DRAFT_4502: EX28DRAFT_4502 - twin arginine-targeting protein translocase TatB, at 68,954 to 69,496
_4502
EX28DRAFT_4503: EX28DRAFT_4503 - Twin arginine targeting (Tat) protein translocase TatC, at 69,499 to 70,269
_4503
EX28DRAFT_4504: EX28DRAFT_4504 - Mg-dependent DNase, at 70,311 to 71,093
_4504
EX28DRAFT_4505: EX28DRAFT_4505 - transcription elongation factor/antiterminator RfaH, at 71,090 to 71,581
_4505
Position (kb)
69
70
71 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 68.647 kb on - strand at 68.650 kb on + strand at 68.650 kb on + strand at 68.650 kb on + strand at 68.650 kb on + strand at 68.650 kb on + strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.651 kb on - strand at 68.652 kb on + strand at 68.652 kb on + strand at 68.653 kb on - strand at 68.671 kb on - strand at 68.678 kb on + strand at 68.679 kb on - strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.695 kb on + strand at 68.696 kb on - strand at 68.696 kb on - strand at 68.696 kb on - strand at 68.710 kb on + strand at 68.721 kb on + strand at 68.721 kb on + strand at 68.722 kb on - strand, within EX28DRAFT_4501 at 68.948 kb on + strand at 69.116 kb on - strand, within EX28DRAFT_4502 at 69.239 kb on + strand, within EX28DRAFT_4502 at 69.240 kb on - strand, within EX28DRAFT_4502 at 69.240 kb on - strand, within EX28DRAFT_4502 at 69.240 kb on - strand, within EX28DRAFT_4502 at 69.241 kb on + strand, within EX28DRAFT_4502 at 69.290 kb on - strand, within EX28DRAFT_4502 at 69.494 kb on + strand at 69.506 kb on + strand at 69.506 kb on + strand at 69.506 kb on + strand at 69.507 kb on - strand at 69.507 kb on - strand at 69.507 kb on - strand at 69.622 kb on + strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.798 kb on + strand, within EX28DRAFT_4503 at 69.799 kb on - strand, within EX28DRAFT_4503 at 69.853 kb on + strand, within EX28DRAFT_4503 at 70.068 kb on + strand, within EX28DRAFT_4503 at 70.081 kb on + strand, within EX28DRAFT_4503 at 70.082 kb on - strand, within EX28DRAFT_4503 at 70.082 kb on - strand, within EX28DRAFT_4503 at 70.083 kb on + strand, within EX28DRAFT_4503 at 70.084 kb on - strand, within EX28DRAFT_4503 at 70.166 kb on - strand, within EX28DRAFT_4503 at 70.188 kb on - strand, within EX28DRAFT_4503 at 70.205 kb on - strand at 70.242 kb on + strand at 70.242 kb on + strand at 70.296 kb on + strand at 70.296 kb on + strand at 70.296 kb on + strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.605 kb on - strand, within EX28DRAFT_4504 at 70.685 kb on + strand, within EX28DRAFT_4504 at 70.818 kb on + strand, within EX28DRAFT_4504 at 70.927 kb on - strand, within EX28DRAFT_4504 at 70.944 kb on - strand, within EX28DRAFT_4504 at 70.983 kb on + strand, within EX28DRAFT_4504 at 71.092 kb on - strand at 71.116 kb on + strand at 71.130 kb on - strand at 71.161 kb on + strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.225 kb on - strand, within EX28DRAFT_4505
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 68,647 - -0.3 68,650 + +0.9 68,650 + -0.1 68,650 + +0.6 68,650 + -0.3 68,650 + +0.9 68,651 - +0.2 68,651 - -0.2 68,651 - +0.5 68,651 - -0.5 68,651 - +0.0 68,651 - +0.3 68,651 - -0.9 68,652 + +0.3 68,652 + -0.3 68,653 - -0.5 68,671 - -0.2 68,678 + -0.4 68,679 - -0.3 68,695 + +0.1 68,695 + -1.5 68,695 + +0.6 68,695 + -0.1 68,695 + +0.6 68,695 + +0.4 68,695 + -0.4 68,696 - -0.1 68,696 - +0.9 68,696 - -0.3 68,710 + -0.4 68,721 + +0.0 68,721 + -0.1 68,722 - EX28DRAFT_4501 0.10 -0.1 68,948 + +0.2 69,116 - EX28DRAFT_4502 0.30 +0.0 69,239 + EX28DRAFT_4502 0.52 +0.0 69,240 - EX28DRAFT_4502 0.53 -1.1 69,240 - EX28DRAFT_4502 0.53 -0.7 69,240 - EX28DRAFT_4502 0.53 -0.7 69,241 + EX28DRAFT_4502 0.53 -0.4 69,290 - EX28DRAFT_4502 0.62 -0.2 69,494 + -0.1 69,506 + -1.1 69,506 + -0.5 69,506 + +0.4 69,507 - -2.9 69,507 - +0.0 69,507 - -1.2 69,622 + EX28DRAFT_4503 0.16 +0.4 69,623 - EX28DRAFT_4503 0.16 -1.7 69,623 - EX28DRAFT_4503 0.16 -2.0 69,623 - EX28DRAFT_4503 0.16 -1.9 69,798 + EX28DRAFT_4503 0.39 -0.1 69,799 - EX28DRAFT_4503 0.39 -0.7 69,853 + EX28DRAFT_4503 0.46 -0.8 70,068 + EX28DRAFT_4503 0.74 +0.0 70,081 + EX28DRAFT_4503 0.75 -0.3 70,082 - EX28DRAFT_4503 0.76 -0.9 70,082 - EX28DRAFT_4503 0.76 +0.3 70,083 + EX28DRAFT_4503 0.76 +1.0 70,084 - EX28DRAFT_4503 0.76 -0.2 70,166 - EX28DRAFT_4503 0.87 -0.4 70,188 - EX28DRAFT_4503 0.89 +2.4 70,205 - -0.5 70,242 + -0.1 70,242 + -0.8 70,296 + -0.2 70,296 + +0.6 70,296 + +0.1 70,297 - +1.1 70,297 - +0.5 70,297 - +1.3 70,297 - +0.3 70,605 - EX28DRAFT_4504 0.38 +0.4 70,685 + EX28DRAFT_4504 0.48 +0.2 70,818 + EX28DRAFT_4504 0.65 +0.6 70,927 - EX28DRAFT_4504 0.79 -0.4 70,944 - EX28DRAFT_4504 0.81 +0.8 70,983 + EX28DRAFT_4504 0.86 -0.1 71,092 - +0.0 71,116 + -0.7 71,130 - -0.1 71,161 + EX28DRAFT_4505 0.14 +0.1 71,162 - EX28DRAFT_4505 0.15 +1.0 71,162 - EX28DRAFT_4505 0.15 -1.4 71,225 - EX28DRAFT_4505 0.27 +0.2
Or see this region's nucleotide sequence