Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4452

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4451 and EX28DRAFT_4452 are separated by 144 nucleotidesEX28DRAFT_4452 and EX28DRAFT_4453 are separated by 345 nucleotides EX28DRAFT_4451: EX28DRAFT_4451 - Superfamily II DNA and RNA helicases, at 17,181 to 18,449 _4451 EX28DRAFT_4452: EX28DRAFT_4452 - thioredoxin, at 18,594 to 18,923 _4452 EX28DRAFT_4453: EX28DRAFT_4453 - transcription termination factor Rho, at 19,269 to 20,528 _4453 Position (kb) 18 19Strain fitness (log2 ratio) -2 -1 0 1at 17.793 kb on + strand, within EX28DRAFT_4451at 17.921 kb on + strand, within EX28DRAFT_4451at 18.183 kb on - strand, within EX28DRAFT_4451at 18.238 kb on - strand, within EX28DRAFT_4451at 18.450 kb on - strandat 18.457 kb on + strandat 18.470 kb on + strandat 18.470 kb on + strandat 18.471 kb on - strandat 18.516 kb on + strandat 18.576 kb on - strandat 18.590 kb on - strandat 18.591 kb on + strandat 18.591 kb on + strandat 18.592 kb on - strandat 18.593 kb on + strandat 18.593 kb on + strandat 18.594 kb on - strandat 18.644 kb on - strand, within EX28DRAFT_4452at 18.647 kb on + strand, within EX28DRAFT_4452at 18.805 kb on - strand, within EX28DRAFT_4452at 19.005 kb on + strandat 19.018 kb on + strandat 19.018 kb on + strandat 19.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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17,793 + EX28DRAFT_4451 0.48 +0.1
17,921 + EX28DRAFT_4451 0.58 +0.2
18,183 - EX28DRAFT_4451 0.79 +0.6
18,238 - EX28DRAFT_4451 0.83 -0.7
18,450 - -0.5
18,457 + +0.3
18,470 + +0.6
18,470 + -1.0
18,471 - +0.4
18,516 + +0.2
18,576 - -1.8
18,590 - -0.3
18,591 + +0.4
18,591 + -0.2
18,592 - -1.1
18,593 + -0.8
18,593 + -0.5
18,594 - +1.0
18,644 - EX28DRAFT_4452 0.15 -1.5
18,647 + EX28DRAFT_4452 0.16 -0.8
18,805 - EX28DRAFT_4452 0.64 -1.6
19,005 + -1.2
19,018 + -0.7
19,018 + -0.6
19,024 + -0.7

Or see this region's nucleotide sequence