Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4423 and EX28DRAFT_4424 are separated by 96 nucleotides EX28DRAFT_4424 and EX28DRAFT_4425 overlap by 18 nucleotides EX28DRAFT_4425 and EX28DRAFT_4426 are separated by 196 nucleotides EX28DRAFT_4426 and EX28DRAFT_4427 are separated by 9 nucleotides
EX28DRAFT_4423: EX28DRAFT_4423 - RNA, at 91,074 to 91,184
_4423
EX28DRAFT_4424: EX28DRAFT_4424 - Transcriptional regulator, at 91,281 to 92,198
_4424
EX28DRAFT_4425: EX28DRAFT_4425 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 92,181 to 93,581
_4425
EX28DRAFT_4426: EX28DRAFT_4426 - transcriptional regulator, TetR family, at 93,778 to 94,416
_4426
EX28DRAFT_4427: EX28DRAFT_4427 - Protein of unknown function (DUF1422), at 94,426 to 94,785
_4427
Position (kb) 92
93
94 Strain fitness (log2 ratio) -1
0
1
2 at 91.184 kb on + strand at 91.193 kb on + strand at 92.267 kb on - strand at 92.528 kb on + strand, within EX28DRAFT_4425 at 92.530 kb on + strand, within EX28DRAFT_4425 at 92.686 kb on + strand, within EX28DRAFT_4425 at 92.686 kb on + strand, within EX28DRAFT_4425 at 92.686 kb on + strand, within EX28DRAFT_4425 at 93.041 kb on + strand, within EX28DRAFT_4425 at 93.302 kb on + strand, within EX28DRAFT_4425 at 93.368 kb on - strand, within EX28DRAFT_4425 at 93.465 kb on - strand at 93.465 kb on - strand at 93.549 kb on - strand at 93.603 kb on + strand at 93.651 kb on - strand at 93.651 kb on - strand at 93.651 kb on - strand at 93.693 kb on - strand at 93.693 kb on - strand at 93.726 kb on - strand at 93.741 kb on + strand at 93.742 kb on - strand at 93.743 kb on + strand at 93.743 kb on + strand at 94.193 kb on - strand, within EX28DRAFT_4426 at 94.366 kb on + strand at 94.495 kb on - strand, within EX28DRAFT_4427 at 94.567 kb on + strand, within EX28DRAFT_4427
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 91,184 + -0.4 91,193 + +1.0 92,267 - +0.0 92,528 + EX28DRAFT_4425 0.25 -1.0 92,530 + EX28DRAFT_4425 0.25 +0.3 92,686 + EX28DRAFT_4425 0.36 +0.3 92,686 + EX28DRAFT_4425 0.36 +0.5 92,686 + EX28DRAFT_4425 0.36 +1.6 93,041 + EX28DRAFT_4425 0.61 -0.1 93,302 + EX28DRAFT_4425 0.80 +0.3 93,368 - EX28DRAFT_4425 0.85 +0.7 93,465 - +0.6 93,465 - +0.5 93,549 - +0.0 93,603 + -0.2 93,651 - +0.0 93,651 - +0.0 93,651 - +0.0 93,693 - -1.3 93,693 - -1.2 93,726 - +0.7 93,741 + +0.2 93,742 - +2.0 93,743 + +0.0 93,743 + -0.2 94,193 - EX28DRAFT_4426 0.65 +0.3 94,366 + -1.1 94,495 - EX28DRAFT_4427 0.19 +0.5 94,567 + EX28DRAFT_4427 0.39 +0.4
Or see this region's nucleotide sequence