Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4399

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4398 and EX28DRAFT_4399 are separated by 173 nucleotidesEX28DRAFT_4399 and EX28DRAFT_4400 are separated by 21 nucleotides EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364 _4398 EX28DRAFT_4399: EX28DRAFT_4399 - glycerol kinase, at 61,538 to 63,046 _4399 EX28DRAFT_4400: EX28DRAFT_4400 - MIP family channel proteins, at 63,068 to 63,913 _4400 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -1 0 1 2at 60.572 kb on + strand, within EX28DRAFT_4398at 60.894 kb on - strand, within EX28DRAFT_4398at 61.009 kb on + strand, within EX28DRAFT_4398at 61.009 kb on + strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.013 kb on + strand, within EX28DRAFT_4398at 61.121 kb on + strand, within EX28DRAFT_4398at 61.122 kb on - strand, within EX28DRAFT_4398at 61.122 kb on - strand, within EX28DRAFT_4398at 61.125 kb on + strand, within EX28DRAFT_4398at 61.165 kb on + strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.301 kb on + strandat 61.301 kb on + strandat 61.301 kb on + strandat 61.302 kb on - strandat 61.302 kb on - strandat 61.302 kb on - strandat 61.487 kb on - strandat 61.539 kb on + strandat 61.607 kb on - strandat 61.799 kb on - strand, within EX28DRAFT_4399at 61.887 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.017 kb on - strand, within EX28DRAFT_4399at 62.053 kb on - strand, within EX28DRAFT_4399at 62.145 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.251 kb on - strand, within EX28DRAFT_4399at 62.363 kb on - strand, within EX28DRAFT_4399at 62.497 kb on - strand, within EX28DRAFT_4399at 62.578 kb on + strand, within EX28DRAFT_4399at 62.600 kb on + strand, within EX28DRAFT_4399at 62.640 kb on + strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.751 kb on + strand, within EX28DRAFT_4399at 62.752 kb on - strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.138 kb on - strandat 63.152 kb on + strandat 63.153 kb on - strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.167 kb on - strand, within EX28DRAFT_4400at 63.219 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.587 kb on - strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.589 kb on - strand, within EX28DRAFT_4400at 63.591 kb on + strand, within EX28DRAFT_4400at 63.592 kb on - strand, within EX28DRAFT_4400at 63.600 kb on + strand, within EX28DRAFT_4400at 63.656 kb on + strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.745 kb on - strand, within EX28DRAFT_4400at 63.778 kb on + strand, within EX28DRAFT_4400at 63.893 kb on + strandat 63.948 kb on - strandat 63.948 kb on - strandat 63.988 kb on - strandat 63.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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60,572 + EX28DRAFT_4398 0.22 -0.2
60,894 - EX28DRAFT_4398 0.53 -0.1
61,009 + EX28DRAFT_4398 0.65 -1.1
61,009 + EX28DRAFT_4398 0.65 +0.1
61,010 - EX28DRAFT_4398 0.65 -0.3
61,010 - EX28DRAFT_4398 0.65 -0.9
61,010 - EX28DRAFT_4398 0.65 +0.1
61,010 - EX28DRAFT_4398 0.65 -0.3
61,010 - EX28DRAFT_4398 0.65 +0.1
61,013 + EX28DRAFT_4398 0.65 +0.2
61,121 + EX28DRAFT_4398 0.76 +0.0
61,122 - EX28DRAFT_4398 0.76 +0.1
61,122 - EX28DRAFT_4398 0.76 -0.0
61,125 + EX28DRAFT_4398 0.76 +0.2
61,165 + EX28DRAFT_4398 0.80 +0.0
61,166 - EX28DRAFT_4398 0.80 +1.1
61,166 - EX28DRAFT_4398 0.80 +0.4
61,166 - EX28DRAFT_4398 0.80 -0.1
61,301 + -0.1
61,301 + -0.3
61,301 + +0.2
61,302 - +0.8
61,302 - -1.2
61,302 - -0.3
61,487 - -0.1
61,539 + -0.1
61,607 - +1.7
61,799 - EX28DRAFT_4399 0.17 +1.7
61,887 + EX28DRAFT_4399 0.23 +2.1
62,016 + EX28DRAFT_4399 0.32 +1.5
62,016 + EX28DRAFT_4399 0.32 +1.9
62,016 + EX28DRAFT_4399 0.32 +2.1
62,017 - EX28DRAFT_4399 0.32 +2.0
62,053 - EX28DRAFT_4399 0.34 +1.0
62,145 + EX28DRAFT_4399 0.40 -0.0
62,233 + EX28DRAFT_4399 0.46 +1.5
62,233 + EX28DRAFT_4399 0.46 +2.1
62,250 + EX28DRAFT_4399 0.47 +1.3
62,250 + EX28DRAFT_4399 0.47 +1.7
62,250 + EX28DRAFT_4399 0.47 +1.7
62,251 - EX28DRAFT_4399 0.47 +0.3
62,363 - EX28DRAFT_4399 0.55 +1.8
62,497 - EX28DRAFT_4399 0.64 +0.6
62,578 + EX28DRAFT_4399 0.69 +1.3
62,600 + EX28DRAFT_4399 0.70 +1.7
62,640 + EX28DRAFT_4399 0.73 +1.6
62,677 - EX28DRAFT_4399 0.75 +1.5
62,677 - EX28DRAFT_4399 0.75 +0.8
62,751 + EX28DRAFT_4399 0.80 +1.7
62,752 - EX28DRAFT_4399 0.80 +2.5
62,755 + EX28DRAFT_4399 0.81 +2.0
62,755 + EX28DRAFT_4399 0.81 +0.5
63,049 + +1.7
63,049 + +2.4
63,049 + +1.2
63,049 + +2.2
63,050 - +0.8
63,050 - +1.7
63,050 - +0.7
63,138 - -1.1
63,152 + +1.3
63,153 - EX28DRAFT_4400 0.10 -0.6
63,166 + EX28DRAFT_4400 0.12 +1.4
63,166 + EX28DRAFT_4400 0.12 +1.0
63,166 + EX28DRAFT_4400 0.12 +2.1
63,167 - EX28DRAFT_4400 0.12 -1.2
63,219 + EX28DRAFT_4400 0.18 +1.4
63,553 + EX28DRAFT_4400 0.57 +0.5
63,553 + EX28DRAFT_4400 0.57 +1.5
63,587 - EX28DRAFT_4400 0.61 -0.3
63,588 + EX28DRAFT_4400 0.61 +0.2
63,588 + EX28DRAFT_4400 0.61 +0.2
63,589 - EX28DRAFT_4400 0.62 +1.0
63,591 + EX28DRAFT_4400 0.62 +0.2
63,592 - EX28DRAFT_4400 0.62 -1.0
63,600 + EX28DRAFT_4400 0.63 +0.3
63,656 + EX28DRAFT_4400 0.70 +0.5
63,657 - EX28DRAFT_4400 0.70 -0.4
63,657 - EX28DRAFT_4400 0.70 +0.2
63,744 + EX28DRAFT_4400 0.80 +0.1
63,744 + EX28DRAFT_4400 0.80 +0.7
63,744 + EX28DRAFT_4400 0.80 +0.7
63,745 - EX28DRAFT_4400 0.80 +0.1
63,778 + EX28DRAFT_4400 0.84 +0.7
63,893 + +0.6
63,948 - -1.4
63,948 - -1.5
63,988 - -1.4
63,988 - -1.0

Or see this region's nucleotide sequence