Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4395 and EX28DRAFT_4396 are separated by 112 nucleotides EX28DRAFT_4396 and EX28DRAFT_4397 are separated by 0 nucleotides EX28DRAFT_4397 and EX28DRAFT_4398 are separated by 96 nucleotides
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
EX28DRAFT_4397: EX28DRAFT_4397 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 59,511 to 60,257
_4397
EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364
_4398
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 58.576 kb on + strand, within EX28DRAFT_4395 at 58.602 kb on + strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.706 kb on - strand, within EX28DRAFT_4395 at 59.012 kb on - strand at 59.070 kb on + strand at 59.070 kb on + strand at 59.071 kb on - strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.099 kb on - strand at 59.099 kb on - strand at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.278 kb on + strand, within EX28DRAFT_4396 at 59.327 kb on + strand, within EX28DRAFT_4396 at 59.328 kb on - strand, within EX28DRAFT_4396 at 59.476 kb on - strand at 59.519 kb on - strand at 59.535 kb on - strand at 59.694 kb on + strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.889 kb on - strand, within EX28DRAFT_4397 at 59.896 kb on + strand, within EX28DRAFT_4397 at 59.897 kb on - strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.062 kb on - strand, within EX28DRAFT_4397 at 60.097 kb on + strand, within EX28DRAFT_4397 at 60.186 kb on + strand at 60.186 kb on + strand at 60.187 kb on - strand at 60.187 kb on - strand at 60.197 kb on + strand at 60.197 kb on + strand at 60.198 kb on - strand at 60.198 kb on - strand at 60.222 kb on + strand at 60.286 kb on + strand at 60.286 kb on + strand at 60.287 kb on - strand at 60.295 kb on + strand at 60.296 kb on - strand at 60.398 kb on - strand at 60.572 kb on + strand, within EX28DRAFT_4398 at 60.894 kb on - strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.013 kb on + strand, within EX28DRAFT_4398 at 61.121 kb on + strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.125 kb on + strand, within EX28DRAFT_4398 at 61.165 kb on + strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 58,576 + EX28DRAFT_4395 0.32 +0.2 58,602 + EX28DRAFT_4395 0.37 -0.0 58,603 - EX28DRAFT_4395 0.37 +0.4 58,603 - EX28DRAFT_4395 0.37 -0.3 58,706 - EX28DRAFT_4395 0.54 -0.1 59,012 - -0.5 59,070 + +0.4 59,070 + +0.1 59,071 - -0.4 59,078 + +0.0 59,078 + +0.6 59,078 + +0.1 59,088 + +0.9 59,088 + -0.4 59,088 + +0.4 59,088 + +0.3 59,088 + +0.1 59,088 + -1.6 59,088 + -2.4 59,089 - +0.3 59,089 - -0.6 59,089 - +0.1 59,089 - -0.3 59,098 + +0.5 59,098 + +0.5 59,098 + +0.0 59,099 - +0.0 59,099 - +0.2 59,202 + EX28DRAFT_4396 0.26 -0.8 59,202 + EX28DRAFT_4396 0.26 +0.0 59,203 - EX28DRAFT_4396 0.27 +0.5 59,203 - EX28DRAFT_4396 0.27 -0.1 59,278 + EX28DRAFT_4396 0.45 -0.5 59,327 + EX28DRAFT_4396 0.56 +0.0 59,328 - EX28DRAFT_4396 0.56 +0.9 59,476 - +0.6 59,519 - +1.5 59,535 - -1.0 59,694 + EX28DRAFT_4397 0.24 -1.7 59,807 - EX28DRAFT_4397 0.40 -0.2 59,807 - EX28DRAFT_4397 0.40 -0.4 59,889 - EX28DRAFT_4397 0.51 +0.0 59,896 + EX28DRAFT_4397 0.52 -1.3 59,897 - EX28DRAFT_4397 0.52 -1.5 60,061 + EX28DRAFT_4397 0.74 -1.9 60,061 + EX28DRAFT_4397 0.74 -3.4 60,062 - EX28DRAFT_4397 0.74 -0.9 60,097 + EX28DRAFT_4397 0.78 -1.7 60,186 + -1.3 60,186 + -1.2 60,187 - -0.4 60,187 - -1.1 60,197 + -0.2 60,197 + -0.8 60,198 - -0.5 60,198 - -1.8 60,222 + -0.7 60,286 + -1.0 60,286 + -0.0 60,287 - -0.2 60,295 + -0.3 60,296 - -0.1 60,398 - +0.4 60,572 + EX28DRAFT_4398 0.22 -0.2 60,894 - EX28DRAFT_4398 0.53 -0.1 61,009 + EX28DRAFT_4398 0.65 -1.1 61,009 + EX28DRAFT_4398 0.65 +0.1 61,010 - EX28DRAFT_4398 0.65 -0.3 61,010 - EX28DRAFT_4398 0.65 -0.9 61,010 - EX28DRAFT_4398 0.65 +0.1 61,010 - EX28DRAFT_4398 0.65 -0.3 61,010 - EX28DRAFT_4398 0.65 +0.1 61,013 + EX28DRAFT_4398 0.65 +0.2 61,121 + EX28DRAFT_4398 0.76 +0.0 61,122 - EX28DRAFT_4398 0.76 +0.1 61,122 - EX28DRAFT_4398 0.76 -0.0 61,125 + EX28DRAFT_4398 0.76 +0.2 61,165 + EX28DRAFT_4398 0.80 +0.0 61,166 - EX28DRAFT_4398 0.80 +1.1 61,166 - EX28DRAFT_4398 0.80 +0.4 61,166 - EX28DRAFT_4398 0.80 -0.1
Or see this region's nucleotide sequence