Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4386

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4384 and EX28DRAFT_4385 are separated by 71 nucleotidesEX28DRAFT_4385 and EX28DRAFT_4386 are separated by 102 nucleotidesEX28DRAFT_4386 and EX28DRAFT_4387 overlap by 4 nucleotidesEX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotides EX28DRAFT_4384: EX28DRAFT_4384 - Superoxide dismutase, at 47,626 to 48,246 _4384 EX28DRAFT_4385: EX28DRAFT_4385 - Uncharacterized protein conserved in bacteria, at 48,318 to 48,992 _4385 EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468 _4386 EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163 _4387 EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820 _4388 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.145 kb on + strand, within EX28DRAFT_4384at 48.148 kb on + strand, within EX28DRAFT_4384at 48.178 kb on + strand, within EX28DRAFT_4384at 48.179 kb on - strand, within EX28DRAFT_4384at 48.245 kb on - strandat 48.278 kb on + strandat 48.296 kb on + strandat 48.510 kb on + strand, within EX28DRAFT_4385at 48.614 kb on + strand, within EX28DRAFT_4385at 48.623 kb on + strand, within EX28DRAFT_4385at 48.627 kb on + strand, within EX28DRAFT_4385at 48.628 kb on - strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.753 kb on + strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.879 kb on + strand, within EX28DRAFT_4385at 48.946 kb on + strandat 48.965 kb on + strandat 49.079 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.109 kb on - strandat 49.259 kb on - strand, within EX28DRAFT_4386at 49.438 kb on + strand, within EX28DRAFT_4386at 49.439 kb on - strand, within EX28DRAFT_4386at 50.275 kb on - strand, within EX28DRAFT_4386at 50.398 kb on - strandat 50.667 kb on + strand, within EX28DRAFT_4387at 50.667 kb on + strand, within EX28DRAFT_4387at 50.668 kb on - strand, within EX28DRAFT_4387at 50.767 kb on + strand, within EX28DRAFT_4387at 50.768 kb on - strand, within EX28DRAFT_4387at 50.980 kb on + strand, within EX28DRAFT_4387at 50.981 kb on - strand, within EX28DRAFT_4387at 51.157 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.169 kb on - strandat 51.209 kb on - strandat 51.222 kb on - strandat 51.231 kb on + strandat 51.231 kb on + strandat 51.232 kb on - strandat 51.265 kb on + strandat 51.265 kb on + strandat 51.266 kb on - strandat 51.385 kb on + strand, within EX28DRAFT_4388at 51.408 kb on + strand, within EX28DRAFT_4388at 51.409 kb on - strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.460 kb on - strand, within EX28DRAFT_4388

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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48,145 + EX28DRAFT_4384 0.84 +0.6
48,148 + EX28DRAFT_4384 0.84 -0.5
48,178 + EX28DRAFT_4384 0.89 +0.7
48,179 - EX28DRAFT_4384 0.89 +0.0
48,245 - +0.5
48,278 + +0.4
48,296 + +0.0
48,510 + EX28DRAFT_4385 0.28 -0.4
48,614 + EX28DRAFT_4385 0.44 +0.1
48,623 + EX28DRAFT_4385 0.45 +0.2
48,627 + EX28DRAFT_4385 0.46 -0.6
48,628 - EX28DRAFT_4385 0.46 +0.1
48,690 + EX28DRAFT_4385 0.55 +0.2
48,690 + EX28DRAFT_4385 0.55 +0.4
48,690 + EX28DRAFT_4385 0.55 -0.2
48,710 + EX28DRAFT_4385 0.58 +0.5
48,710 + EX28DRAFT_4385 0.58 +0.2
48,711 - EX28DRAFT_4385 0.58 +0.8
48,711 - EX28DRAFT_4385 0.58 +0.5
48,753 + EX28DRAFT_4385 0.64 +0.1
48,858 - EX28DRAFT_4385 0.80 +0.5
48,858 - EX28DRAFT_4385 0.80 -0.6
48,879 + EX28DRAFT_4385 0.83 -0.0
48,946 + -0.5
48,965 + -0.1
49,079 + +0.5
49,108 + +0.3
49,108 + +1.0
49,108 + +0.5
49,108 + +0.4
49,108 + +0.8
49,109 - +0.9
49,259 - EX28DRAFT_4386 0.12 -1.8
49,438 + EX28DRAFT_4386 0.25 -1.2
49,439 - EX28DRAFT_4386 0.25 -3.2
50,275 - EX28DRAFT_4386 0.86 -3.0
50,398 - -3.5
50,667 + EX28DRAFT_4387 0.29 +0.1
50,667 + EX28DRAFT_4387 0.29 -0.5
50,668 - EX28DRAFT_4387 0.29 -1.1
50,767 + EX28DRAFT_4387 0.43 +0.1
50,768 - EX28DRAFT_4387 0.43 +0.9
50,980 + EX28DRAFT_4387 0.74 +0.8
50,981 - EX28DRAFT_4387 0.74 +1.0
51,157 + +0.1
51,168 + -0.3
51,168 + +1.3
51,168 + +0.5
51,169 - +0.4
51,209 - +0.0
51,222 - +0.0
51,231 + +0.3
51,231 + +0.0
51,232 - -0.2
51,265 + -0.6
51,265 + +0.7
51,266 - +0.2
51,385 + EX28DRAFT_4388 0.14 +0.7
51,408 + EX28DRAFT_4388 0.19 -0.6
51,409 - EX28DRAFT_4388 0.19 +0.2
51,445 + EX28DRAFT_4388 0.26 -0.5
51,445 + EX28DRAFT_4388 0.26 -0.2
51,446 - EX28DRAFT_4388 0.26 +0.2
51,446 - EX28DRAFT_4388 0.26 -0.1
51,460 - EX28DRAFT_4388 0.29 +1.6

Or see this region's nucleotide sequence