Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4383

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4381 and EX28DRAFT_4382 overlap by 1 nucleotidesEX28DRAFT_4382 and EX28DRAFT_4383 are separated by 103 nucleotidesEX28DRAFT_4383 and EX28DRAFT_4384 are separated by 203 nucleotidesEX28DRAFT_4384 and EX28DRAFT_4385 are separated by 71 nucleotides EX28DRAFT_4381: EX28DRAFT_4381 - Branched-chain amino acid transport protein (AzlD), at 45,788 to 46,111 _4381 EX28DRAFT_4382: EX28DRAFT_4382 - Predicted branched-chain amino acid permease (azaleucine resistance), at 46,111 to 46,770 _4382 EX28DRAFT_4383: EX28DRAFT_4383 - transcriptional regulator, XRE family with cupin sensor, at 46,874 to 47,422 _4383 EX28DRAFT_4384: EX28DRAFT_4384 - Superoxide dismutase, at 47,626 to 48,246 _4384 EX28DRAFT_4385: EX28DRAFT_4385 - Uncharacterized protein conserved in bacteria, at 48,318 to 48,992 _4385 Position (kb) 46 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.057 kb on - strand, within EX28DRAFT_4381at 46.276 kb on + strand, within EX28DRAFT_4382at 46.378 kb on + strand, within EX28DRAFT_4382at 46.379 kb on - strand, within EX28DRAFT_4382at 46.379 kb on - strand, within EX28DRAFT_4382at 46.590 kb on + strand, within EX28DRAFT_4382at 46.596 kb on + strand, within EX28DRAFT_4382at 46.633 kb on + strand, within EX28DRAFT_4382at 46.633 kb on + strand, within EX28DRAFT_4382at 46.661 kb on + strand, within EX28DRAFT_4382at 46.683 kb on - strand, within EX28DRAFT_4382at 46.733 kb on - strandat 46.770 kb on + strandat 46.871 kb on + strandat 46.871 kb on + strandat 46.871 kb on + strandat 46.871 kb on + strandat 46.972 kb on + strand, within EX28DRAFT_4383at 47.056 kb on - strand, within EX28DRAFT_4383at 47.119 kb on + strand, within EX28DRAFT_4383at 47.119 kb on + strand, within EX28DRAFT_4383at 47.196 kb on + strand, within EX28DRAFT_4383at 47.197 kb on - strand, within EX28DRAFT_4383at 47.197 kb on - strand, within EX28DRAFT_4383at 47.197 kb on - strand, within EX28DRAFT_4383at 47.197 kb on - strand, within EX28DRAFT_4383at 47.199 kb on - strand, within EX28DRAFT_4383at 47.199 kb on - strand, within EX28DRAFT_4383at 47.209 kb on + strand, within EX28DRAFT_4383at 47.267 kb on - strand, within EX28DRAFT_4383at 47.267 kb on - strand, within EX28DRAFT_4383at 47.267 kb on - strand, within EX28DRAFT_4383at 47.269 kb on + strand, within EX28DRAFT_4383at 47.269 kb on + strand, within EX28DRAFT_4383at 47.270 kb on - strand, within EX28DRAFT_4383at 47.270 kb on - strand, within EX28DRAFT_4383at 47.270 kb on - strand, within EX28DRAFT_4383at 47.336 kb on + strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.555 kb on - strandat 47.558 kb on + strandat 47.562 kb on + strandat 47.563 kb on - strandat 47.563 kb on - strandat 47.563 kb on - strandat 47.564 kb on + strandat 47.626 kb on - strandat 47.632 kb on + strandat 47.634 kb on + strandat 47.635 kb on - strandat 47.728 kb on + strand, within EX28DRAFT_4384at 47.844 kb on + strand, within EX28DRAFT_4384at 48.145 kb on + strand, within EX28DRAFT_4384at 48.148 kb on + strand, within EX28DRAFT_4384at 48.178 kb on + strand, within EX28DRAFT_4384at 48.179 kb on - strand, within EX28DRAFT_4384at 48.245 kb on - strandat 48.278 kb on + strandat 48.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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46,056 + EX28DRAFT_4381 0.83 -0.6
46,056 + EX28DRAFT_4381 0.83 +0.9
46,056 + EX28DRAFT_4381 0.83 -1.2
46,056 + EX28DRAFT_4381 0.83 -0.3
46,057 - EX28DRAFT_4381 0.83 -0.0
46,276 + EX28DRAFT_4382 0.25 +0.5
46,378 + EX28DRAFT_4382 0.40 +0.9
46,379 - EX28DRAFT_4382 0.41 -1.2
46,379 - EX28DRAFT_4382 0.41 -0.5
46,590 + EX28DRAFT_4382 0.73 -0.5
46,596 + EX28DRAFT_4382 0.73 +1.2
46,633 + EX28DRAFT_4382 0.79 +0.2
46,633 + EX28DRAFT_4382 0.79 -1.6
46,661 + EX28DRAFT_4382 0.83 -0.1
46,683 - EX28DRAFT_4382 0.87 +0.2
46,733 - -0.4
46,770 + +0.5
46,871 + +0.1
46,871 + -0.7
46,871 + -0.9
46,871 + +0.6
46,972 + EX28DRAFT_4383 0.18 -0.4
47,056 - EX28DRAFT_4383 0.33 -2.0
47,119 + EX28DRAFT_4383 0.45 -3.0
47,119 + EX28DRAFT_4383 0.45 -1.9
47,196 + EX28DRAFT_4383 0.59 -2.7
47,197 - EX28DRAFT_4383 0.59 -1.9
47,197 - EX28DRAFT_4383 0.59 -3.7
47,197 - EX28DRAFT_4383 0.59 -2.2
47,197 - EX28DRAFT_4383 0.59 -2.4
47,199 - EX28DRAFT_4383 0.59 -1.6
47,199 - EX28DRAFT_4383 0.59 -2.6
47,209 + EX28DRAFT_4383 0.61 -1.7
47,267 - EX28DRAFT_4383 0.72 -3.1
47,267 - EX28DRAFT_4383 0.72 -3.1
47,267 - EX28DRAFT_4383 0.72 -2.0
47,269 + EX28DRAFT_4383 0.72 -2.1
47,269 + EX28DRAFT_4383 0.72 -1.7
47,270 - EX28DRAFT_4383 0.72 -2.4
47,270 - EX28DRAFT_4383 0.72 -2.3
47,270 - EX28DRAFT_4383 0.72 -1.2
47,336 + EX28DRAFT_4383 0.84 -4.4
47,337 - EX28DRAFT_4383 0.84 -2.5
47,337 - EX28DRAFT_4383 0.84 -0.2
47,337 - EX28DRAFT_4383 0.84 -3.3
47,555 - -0.9
47,558 + +0.6
47,562 + +1.0
47,563 - +0.3
47,563 - +0.3
47,563 - -0.2
47,564 + +0.6
47,626 - -0.3
47,632 + -0.2
47,634 + +0.0
47,635 - +0.9
47,728 + EX28DRAFT_4384 0.16 -0.4
47,844 + EX28DRAFT_4384 0.35 +0.2
48,145 + EX28DRAFT_4384 0.84 +0.6
48,148 + EX28DRAFT_4384 0.84 -0.5
48,178 + EX28DRAFT_4384 0.89 +0.7
48,179 - EX28DRAFT_4384 0.89 +0.0
48,245 - +0.5
48,278 + +0.4
48,296 + +0.0

Or see this region's nucleotide sequence