Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4376

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4374 and EX28DRAFT_4375 overlap by 4 nucleotidesEX28DRAFT_4375 and EX28DRAFT_4376 overlap by 4 nucleotidesEX28DRAFT_4376 and EX28DRAFT_4377 are separated by 12 nucleotides EX28DRAFT_4374: EX28DRAFT_4374 - formate dehydrogenase accessory protein FdhE, at 38,688 to 39,617 _4374 EX28DRAFT_4375: EX28DRAFT_4375 - formate dehydrogenase, gamma subunit, at 39,614 to 40,249 _4375 EX28DRAFT_4376: EX28DRAFT_4376 - formate dehydrogenase, beta subunit, Fe-S containing, at 40,246 to 41,148 _4376 EX28DRAFT_4377: EX28DRAFT_4377 - formate dehydrogenase (quinone-dependent) catalytic subunit, at 41,161 to 44,211 _4377 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.556 kb on + strandat 39.557 kb on - strandat 39.655 kb on - strandat 39.686 kb on - strand, within EX28DRAFT_4375at 39.744 kb on + strand, within EX28DRAFT_4375at 39.744 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.844 kb on - strand, within EX28DRAFT_4375at 39.892 kb on + strand, within EX28DRAFT_4375at 39.931 kb on - strand, within EX28DRAFT_4375at 39.971 kb on - strand, within EX28DRAFT_4375at 39.971 kb on - strand, within EX28DRAFT_4375at 39.977 kb on - strand, within EX28DRAFT_4375at 39.992 kb on + strand, within EX28DRAFT_4375at 39.992 kb on + strand, within EX28DRAFT_4375at 39.993 kb on - strand, within EX28DRAFT_4375at 39.994 kb on + strand, within EX28DRAFT_4375at 40.010 kb on + strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.015 kb on + strand, within EX28DRAFT_4375at 40.045 kb on + strand, within EX28DRAFT_4375at 40.221 kb on + strandat 40.323 kb on - strandat 40.472 kb on + strand, within EX28DRAFT_4376at 40.473 kb on - strand, within EX28DRAFT_4376at 40.473 kb on - strand, within EX28DRAFT_4376at 40.575 kb on + strand, within EX28DRAFT_4376at 40.576 kb on - strand, within EX28DRAFT_4376at 40.787 kb on + strand, within EX28DRAFT_4376at 40.788 kb on - strand, within EX28DRAFT_4376at 40.848 kb on + strand, within EX28DRAFT_4376at 40.848 kb on + strand, within EX28DRAFT_4376at 40.849 kb on - strand, within EX28DRAFT_4376at 40.849 kb on - strand, within EX28DRAFT_4376at 40.952 kb on + strand, within EX28DRAFT_4376at 40.953 kb on - strand, within EX28DRAFT_4376at 40.953 kb on - strand, within EX28DRAFT_4376at 41.023 kb on - strand, within EX28DRAFT_4376at 41.141 kb on + strandat 41.142 kb on - strandat 41.149 kb on - strandat 41.277 kb on - strandat 41.370 kb on + strandat 41.370 kb on + strandat 41.371 kb on - strandat 41.371 kb on - strandat 41.502 kb on - strand, within EX28DRAFT_4377at 41.661 kb on - strand, within EX28DRAFT_4377at 41.691 kb on + strand, within EX28DRAFT_4377at 41.691 kb on + strand, within EX28DRAFT_4377at 41.873 kb on + strand, within EX28DRAFT_4377

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
39,556 + -0.0
39,557 - +0.1
39,655 - -0.1
39,686 - EX28DRAFT_4375 0.11 -0.6
39,744 + EX28DRAFT_4375 0.20 +0.1
39,744 + EX28DRAFT_4375 0.20 +0.5
39,748 + EX28DRAFT_4375 0.21 +0.6
39,748 + EX28DRAFT_4375 0.21 -0.3
39,748 + EX28DRAFT_4375 0.21 +0.3
39,749 - EX28DRAFT_4375 0.21 -0.1
39,749 - EX28DRAFT_4375 0.21 +0.5
39,749 - EX28DRAFT_4375 0.21 +0.8
39,749 - EX28DRAFT_4375 0.21 +0.1
39,749 - EX28DRAFT_4375 0.21 -0.1
39,844 - EX28DRAFT_4375 0.36 -0.1
39,892 + EX28DRAFT_4375 0.44 +0.1
39,931 - EX28DRAFT_4375 0.50 -0.0
39,971 - EX28DRAFT_4375 0.56 -0.5
39,971 - EX28DRAFT_4375 0.56 -0.0
39,977 - EX28DRAFT_4375 0.57 +0.0
39,992 + EX28DRAFT_4375 0.59 -0.2
39,992 + EX28DRAFT_4375 0.59 -0.4
39,993 - EX28DRAFT_4375 0.60 +0.1
39,994 + EX28DRAFT_4375 0.60 +0.6
40,010 + EX28DRAFT_4375 0.62 -0.3
40,011 - EX28DRAFT_4375 0.62 -0.1
40,011 - EX28DRAFT_4375 0.62 -2.2
40,011 - EX28DRAFT_4375 0.62 -0.3
40,011 - EX28DRAFT_4375 0.62 +0.5
40,015 + EX28DRAFT_4375 0.63 +0.6
40,045 + EX28DRAFT_4375 0.68 -0.2
40,221 + +0.6
40,323 - -0.3
40,472 + EX28DRAFT_4376 0.25 -0.2
40,473 - EX28DRAFT_4376 0.25 +0.2
40,473 - EX28DRAFT_4376 0.25 +0.7
40,575 + EX28DRAFT_4376 0.36 +0.7
40,576 - EX28DRAFT_4376 0.37 +1.1
40,787 + EX28DRAFT_4376 0.60 +0.1
40,788 - EX28DRAFT_4376 0.60 -0.2
40,848 + EX28DRAFT_4376 0.67 +0.1
40,848 + EX28DRAFT_4376 0.67 +0.3
40,849 - EX28DRAFT_4376 0.67 +0.5
40,849 - EX28DRAFT_4376 0.67 +0.3
40,952 + EX28DRAFT_4376 0.78 -0.3
40,953 - EX28DRAFT_4376 0.78 -0.2
40,953 - EX28DRAFT_4376 0.78 +1.8
41,023 - EX28DRAFT_4376 0.86 +0.2
41,141 + -0.3
41,142 - -0.1
41,149 - -0.1
41,277 - -0.1
41,370 + -0.2
41,370 + -0.3
41,371 - -0.1
41,371 - +0.4
41,502 - EX28DRAFT_4377 0.11 +0.2
41,661 - EX28DRAFT_4377 0.16 -0.5
41,691 + EX28DRAFT_4377 0.17 +0.1
41,691 + EX28DRAFT_4377 0.17 +0.4
41,873 + EX28DRAFT_4377 0.23 -0.3

Or see this region's nucleotide sequence