Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4329

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4328 and EX28DRAFT_4329 are separated by 51 nucleotidesEX28DRAFT_4329 and EX28DRAFT_4330 are separated by 31 nucleotides EX28DRAFT_4328: EX28DRAFT_4328 - Isocitrate dehydrogenase kinase/phosphatase, at 134,778 to 136,529 _4328 EX28DRAFT_4329: EX28DRAFT_4329 - isocitrate lyase, at 136,581 to 137,885 _4329 EX28DRAFT_4330: EX28DRAFT_4330 - malate synthase A, at 137,917 to 139,518 _4330 Position (kb) 136 137 138Strain fitness (log2 ratio) -1 0 1at 135.619 kb on + strand, within EX28DRAFT_4328at 135.619 kb on + strand, within EX28DRAFT_4328at 135.620 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.764 kb on - strand, within EX28DRAFT_4328at 135.917 kb on + strand, within EX28DRAFT_4328at 136.005 kb on - strand, within EX28DRAFT_4328at 136.006 kb on + strand, within EX28DRAFT_4328at 136.007 kb on - strand, within EX28DRAFT_4328at 136.026 kb on - strand, within EX28DRAFT_4328at 136.026 kb on - strand, within EX28DRAFT_4328at 136.167 kb on + strand, within EX28DRAFT_4328at 136.167 kb on + strand, within EX28DRAFT_4328at 136.183 kb on - strand, within EX28DRAFT_4328at 136.210 kb on + strand, within EX28DRAFT_4328at 136.211 kb on - strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.274 kb on - strand, within EX28DRAFT_4328at 136.274 kb on - strand, within EX28DRAFT_4328at 136.380 kb on - strandat 136.494 kb on - strandat 136.494 kb on - strandat 136.530 kb on - strandat 136.530 kb on - strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.632 kb on - strandat 136.644 kb on - strandat 136.658 kb on + strandat 136.754 kb on - strand, within EX28DRAFT_4329at 136.754 kb on - strand, within EX28DRAFT_4329at 136.846 kb on + strand, within EX28DRAFT_4329at 136.853 kb on - strand, within EX28DRAFT_4329at 136.939 kb on + strand, within EX28DRAFT_4329at 136.939 kb on + strand, within EX28DRAFT_4329at 136.940 kb on - strand, within EX28DRAFT_4329at 137.099 kb on - strand, within EX28DRAFT_4329at 137.162 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329at 137.569 kb on + strand, within EX28DRAFT_4329at 137.570 kb on - strand, within EX28DRAFT_4329at 137.620 kb on + strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.625 kb on - strand, within EX28DRAFT_4329at 137.625 kb on - strand, within EX28DRAFT_4329at 137.807 kb on - strandat 137.807 kb on - strandat 137.900 kb on + strandat 137.900 kb on + strandat 137.900 kb on + strandat 137.903 kb on + strandat 137.903 kb on + strandat 137.903 kb on + strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.906 kb on + strandat 137.906 kb on + strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.918 kb on + strandat 137.959 kb on + strandat 137.960 kb on - strandat 138.154 kb on - strand, within EX28DRAFT_4330at 138.195 kb on - strand, within EX28DRAFT_4330at 138.198 kb on + strand, within EX28DRAFT_4330at 138.198 kb on + strand, within EX28DRAFT_4330at 138.199 kb on - strand, within EX28DRAFT_4330at 138.199 kb on - strand, within EX28DRAFT_4330at 138.202 kb on + strand, within EX28DRAFT_4330at 138.202 kb on + strand, within EX28DRAFT_4330at 138.236 kb on + strand, within EX28DRAFT_4330at 138.237 kb on - strand, within EX28DRAFT_4330at 138.671 kb on + strand, within EX28DRAFT_4330at 138.682 kb on - strand, within EX28DRAFT_4330at 138.884 kb on + strand, within EX28DRAFT_4330

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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135,619 + EX28DRAFT_4328 0.48 +0.5
135,619 + EX28DRAFT_4328 0.48 -0.3
135,620 - EX28DRAFT_4328 0.48 +0.5
135,678 - EX28DRAFT_4328 0.51 +0.6
135,678 - EX28DRAFT_4328 0.51 -0.1
135,678 - EX28DRAFT_4328 0.51 +0.4
135,679 + EX28DRAFT_4328 0.51 +0.5
135,679 + EX28DRAFT_4328 0.51 +0.2
135,679 + EX28DRAFT_4328 0.51 -0.4
135,680 - EX28DRAFT_4328 0.51 +0.2
135,680 - EX28DRAFT_4328 0.51 +1.3
135,680 - EX28DRAFT_4328 0.51 -0.1
135,680 - EX28DRAFT_4328 0.51 +0.4
135,764 - EX28DRAFT_4328 0.56 +0.6
135,917 + EX28DRAFT_4328 0.65 +0.3
136,005 - EX28DRAFT_4328 0.70 +0.5
136,006 + EX28DRAFT_4328 0.70 -0.7
136,007 - EX28DRAFT_4328 0.70 -0.4
136,026 - EX28DRAFT_4328 0.71 -0.1
136,026 - EX28DRAFT_4328 0.71 -0.0
136,167 + EX28DRAFT_4328 0.79 -0.4
136,167 + EX28DRAFT_4328 0.79 -0.0
136,183 - EX28DRAFT_4328 0.80 -0.2
136,210 + EX28DRAFT_4328 0.82 -0.2
136,211 - EX28DRAFT_4328 0.82 +0.2
136,273 + EX28DRAFT_4328 0.85 +0.2
136,273 + EX28DRAFT_4328 0.85 +0.1
136,273 + EX28DRAFT_4328 0.85 -0.5
136,274 - EX28DRAFT_4328 0.85 -0.5
136,274 - EX28DRAFT_4328 0.85 +0.7
136,380 - +0.5
136,494 - +0.3
136,494 - -0.1
136,530 - -0.9
136,530 - -0.1
136,531 + +0.1
136,531 + -0.7
136,531 + +0.6
136,531 + -0.2
136,531 + +0.2
136,532 - +0.2
136,532 - +0.2
136,532 - +0.2
136,532 - -0.5
136,632 - +0.1
136,644 - +0.4
136,658 + -0.8
136,754 - EX28DRAFT_4329 0.13 +0.1
136,754 - EX28DRAFT_4329 0.13 +0.3
136,846 + EX28DRAFT_4329 0.20 -0.7
136,853 - EX28DRAFT_4329 0.21 +0.4
136,939 + EX28DRAFT_4329 0.27 +0.0
136,939 + EX28DRAFT_4329 0.27 -0.7
136,940 - EX28DRAFT_4329 0.28 -0.1
137,099 - EX28DRAFT_4329 0.40 -0.1
137,162 + EX28DRAFT_4329 0.45 +0.1
137,437 + EX28DRAFT_4329 0.66 +0.2
137,437 + EX28DRAFT_4329 0.66 +0.1
137,438 - EX28DRAFT_4329 0.66 +0.3
137,438 - EX28DRAFT_4329 0.66 +0.8
137,569 + EX28DRAFT_4329 0.76 +0.7
137,570 - EX28DRAFT_4329 0.76 +0.4
137,620 + EX28DRAFT_4329 0.80 +0.0
137,621 - EX28DRAFT_4329 0.80 -0.3
137,621 - EX28DRAFT_4329 0.80 +1.7
137,621 - EX28DRAFT_4329 0.80 -0.1
137,621 - EX28DRAFT_4329 0.80 -1.1
137,625 - EX28DRAFT_4329 0.80 +0.2
137,625 - EX28DRAFT_4329 0.80 -0.2
137,807 - -0.1
137,807 - -0.0
137,900 + +0.4
137,900 + +0.5
137,900 + +0.4
137,903 + +0.2
137,903 + -0.1
137,903 + +0.6
137,904 - -0.1
137,904 - +0.3
137,904 - +1.0
137,904 - +0.1
137,904 - +0.7
137,904 - -0.1
137,906 + +0.7
137,906 + +0.2
137,907 - +0.9
137,907 - +1.4
137,907 - -0.3
137,907 - -0.1
137,918 + +0.1
137,959 + +0.4
137,960 - +1.5
138,154 - EX28DRAFT_4330 0.15 +0.1
138,195 - EX28DRAFT_4330 0.17 -0.4
138,198 + EX28DRAFT_4330 0.18 -1.4
138,198 + EX28DRAFT_4330 0.18 +0.0
138,199 - EX28DRAFT_4330 0.18 -1.2
138,199 - EX28DRAFT_4330 0.18 -0.7
138,202 + EX28DRAFT_4330 0.18 -0.3
138,202 + EX28DRAFT_4330 0.18 -0.2
138,236 + EX28DRAFT_4330 0.20 +0.1
138,237 - EX28DRAFT_4330 0.20 -0.0
138,671 + EX28DRAFT_4330 0.47 +0.6
138,682 - EX28DRAFT_4330 0.48 +0.4
138,884 + EX28DRAFT_4330 0.60 +0.5

Or see this region's nucleotide sequence