Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4298 and EX28DRAFT_4299 are separated by 127 nucleotides EX28DRAFT_4299 and EX28DRAFT_4300 overlap by 17 nucleotides EX28DRAFT_4300 and EX28DRAFT_4301 are separated by 60 nucleotides EX28DRAFT_4301 and EX28DRAFT_4302 are separated by 129 nucleotides
EX28DRAFT_4298: EX28DRAFT_4298 - signal recognition particle-docking protein FtsY, at 101,676 to 103,136
_4298
EX28DRAFT_4299: EX28DRAFT_4299 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 103,264 to 103,866
_4299
EX28DRAFT_4300: EX28DRAFT_4300 - Predicted membrane protein, at 103,850 to 104,131
_4300
EX28DRAFT_4301: EX28DRAFT_4301 - Protein of unknown function (DUF2500), at 104,192 to 104,548
_4301
EX28DRAFT_4302: EX28DRAFT_4302 - Predicted membrane protein, at 104,678 to 105,304
_4302
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 103.164 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.193 kb on - strand at 103.193 kb on - strand at 103.205 kb on + strand at 103.209 kb on + strand at 103.209 kb on + strand at 103.210 kb on - strand at 103.366 kb on - strand, within EX28DRAFT_4299 at 103.395 kb on + strand, within EX28DRAFT_4299 at 103.982 kb on - strand, within EX28DRAFT_4300 at 104.229 kb on + strand, within EX28DRAFT_4301 at 104.229 kb on + strand, within EX28DRAFT_4301 at 104.268 kb on + strand, within EX28DRAFT_4301 at 104.320 kb on + strand, within EX28DRAFT_4301 at 104.583 kb on + strand at 104.626 kb on + strand at 104.627 kb on - strand at 104.674 kb on + strand at 104.674 kb on + strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.692 kb on + strand at 104.693 kb on - strand at 104.720 kb on + strand at 104.721 kb on - strand at 104.768 kb on - strand, within EX28DRAFT_4302 at 104.834 kb on + strand, within EX28DRAFT_4302 at 104.945 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.954 kb on + strand, within EX28DRAFT_4302 at 105.076 kb on + strand, within EX28DRAFT_4302 at 105.082 kb on + strand, within EX28DRAFT_4302 at 105.106 kb on - strand, within EX28DRAFT_4302
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 103,164 - -1.7 103,166 - -0.0 103,166 - +0.9 103,166 - +0.2 103,166 - -1.8 103,166 - +0.1 103,166 - +1.1 103,193 - -0.9 103,193 - +0.3 103,205 + +0.3 103,209 + -0.5 103,209 + -0.7 103,210 - -0.1 103,366 - EX28DRAFT_4299 0.17 -0.3 103,395 + EX28DRAFT_4299 0.22 +0.1 103,982 - EX28DRAFT_4300 0.47 -1.4 104,229 + EX28DRAFT_4301 0.10 -0.1 104,229 + EX28DRAFT_4301 0.10 -0.1 104,268 + EX28DRAFT_4301 0.21 -0.0 104,320 + EX28DRAFT_4301 0.36 +0.4 104,583 + +0.7 104,626 + +0.6 104,627 - -1.5 104,674 + -0.6 104,674 + -0.4 104,678 - -1.2 104,678 - -0.2 104,692 + -1.1 104,693 - +0.2 104,720 + +0.0 104,721 - +0.4 104,768 - EX28DRAFT_4302 0.14 -0.1 104,834 + EX28DRAFT_4302 0.25 -0.6 104,945 + EX28DRAFT_4302 0.43 -0.0 104,947 + EX28DRAFT_4302 0.43 -0.5 104,947 + EX28DRAFT_4302 0.43 -0.2 104,947 + EX28DRAFT_4302 0.43 -1.2 104,948 - EX28DRAFT_4302 0.43 +0.8 104,948 - EX28DRAFT_4302 0.43 -1.2 104,948 - EX28DRAFT_4302 0.43 +0.4 104,954 + EX28DRAFT_4302 0.44 -0.6 105,076 + EX28DRAFT_4302 0.63 +0.4 105,082 + EX28DRAFT_4302 0.64 -0.3 105,106 - EX28DRAFT_4302 0.68 -0.1
Or see this region's nucleotide sequence