Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4272 and EX28DRAFT_4273 are separated by 3 nucleotides EX28DRAFT_4273 and EX28DRAFT_4274 are separated by 126 nucleotides EX28DRAFT_4274 and EX28DRAFT_4275 are separated by 44 nucleotides EX28DRAFT_4275 and EX28DRAFT_4276 are separated by 123 nucleotides
EX28DRAFT_4272: EX28DRAFT_4272 - gluconate transporter, at 77,127 to 78,467
_4272
EX28DRAFT_4273: EX28DRAFT_4273 - carbohydrate kinase, thermoresistant glucokinase family, at 78,471 to 78,998
_4273
EX28DRAFT_4274: EX28DRAFT_4274 - transcriptional regulator, LacI family, at 79,125 to 80,177
_4274
EX28DRAFT_4275: EX28DRAFT_4275 - Pirin-related protein, at 80,222 to 80,917
_4275
EX28DRAFT_4276: EX28DRAFT_4276 - Predicted dehydrogenases and related proteins, at 81,041 to 82,078
_4276
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 78.360 kb on - strand at 78.360 kb on - strand at 78.392 kb on + strand at 78.450 kb on + strand at 78.462 kb on - strand at 78.472 kb on + strand at 78.473 kb on - strand at 78.482 kb on + strand at 78.482 kb on + strand at 78.483 kb on - strand at 78.486 kb on - strand at 78.673 kb on + strand, within EX28DRAFT_4273 at 78.674 kb on - strand, within EX28DRAFT_4273 at 78.674 kb on - strand, within EX28DRAFT_4273 at 78.773 kb on + strand, within EX28DRAFT_4273 at 78.968 kb on - strand at 78.987 kb on - strand at 79.130 kb on + strand at 79.131 kb on - strand at 79.158 kb on + strand at 79.233 kb on - strand, within EX28DRAFT_4274 at 79.233 kb on - strand, within EX28DRAFT_4274 at 79.453 kb on + strand, within EX28DRAFT_4274 at 79.483 kb on + strand, within EX28DRAFT_4274 at 79.484 kb on - strand, within EX28DRAFT_4274 at 79.538 kb on + strand, within EX28DRAFT_4274 at 79.539 kb on - strand, within EX28DRAFT_4274 at 79.542 kb on - strand, within EX28DRAFT_4274 at 79.813 kb on + strand, within EX28DRAFT_4274 at 79.975 kb on + strand, within EX28DRAFT_4274 at 79.976 kb on - strand, within EX28DRAFT_4274 at 80.044 kb on - strand, within EX28DRAFT_4274 at 80.209 kb on + strand at 80.210 kb on - strand at 80.224 kb on - strand at 80.574 kb on + strand, within EX28DRAFT_4275 at 80.607 kb on + strand, within EX28DRAFT_4275 at 80.642 kb on - strand, within EX28DRAFT_4275 at 80.642 kb on - strand, within EX28DRAFT_4275 at 80.718 kb on + strand, within EX28DRAFT_4275 at 80.718 kb on + strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.719 kb on - strand, within EX28DRAFT_4275 at 80.829 kb on + strand, within EX28DRAFT_4275 at 80.829 kb on + strand, within EX28DRAFT_4275 at 80.830 kb on - strand, within EX28DRAFT_4275 at 80.906 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.949 kb on - strand at 80.977 kb on + strand at 81.174 kb on + strand, within EX28DRAFT_4276 at 81.175 kb on - strand, within EX28DRAFT_4276
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 78,360 - +0.1 78,360 - -0.3 78,392 + -0.8 78,450 + -0.2 78,462 - +0.1 78,472 + +1.0 78,473 - -0.6 78,482 + -0.5 78,482 + -0.5 78,483 - -0.3 78,486 - +0.1 78,673 + EX28DRAFT_4273 0.38 -0.3 78,674 - EX28DRAFT_4273 0.38 +0.2 78,674 - EX28DRAFT_4273 0.38 -0.0 78,773 + EX28DRAFT_4273 0.57 -0.1 78,968 - -0.1 78,987 - +0.4 79,130 + -0.1 79,131 - -1.0 79,158 + -1.4 79,233 - EX28DRAFT_4274 0.10 -0.9 79,233 - EX28DRAFT_4274 0.10 -0.1 79,453 + EX28DRAFT_4274 0.31 -3.2 79,483 + EX28DRAFT_4274 0.34 -0.9 79,484 - EX28DRAFT_4274 0.34 -0.6 79,538 + EX28DRAFT_4274 0.39 -0.1 79,539 - EX28DRAFT_4274 0.39 -1.5 79,542 - EX28DRAFT_4274 0.40 +0.2 79,813 + EX28DRAFT_4274 0.65 -0.2 79,975 + EX28DRAFT_4274 0.81 -0.2 79,976 - EX28DRAFT_4274 0.81 -1.3 80,044 - EX28DRAFT_4274 0.87 -0.7 80,209 + +1.5 80,210 - -0.2 80,224 - -0.5 80,574 + EX28DRAFT_4275 0.51 -0.1 80,607 + EX28DRAFT_4275 0.55 -0.8 80,642 - EX28DRAFT_4275 0.60 -0.1 80,642 - EX28DRAFT_4275 0.60 +0.5 80,718 + EX28DRAFT_4275 0.71 +0.2 80,718 + EX28DRAFT_4275 0.71 -0.7 80,719 - EX28DRAFT_4275 0.71 +0.6 80,719 - EX28DRAFT_4275 0.71 +0.4 80,719 - EX28DRAFT_4275 0.71 +0.4 80,719 - EX28DRAFT_4275 0.71 -2.0 80,719 - EX28DRAFT_4275 0.71 +1.0 80,719 - EX28DRAFT_4275 0.71 +0.7 80,719 - EX28DRAFT_4275 0.71 -0.6 80,829 + EX28DRAFT_4275 0.87 +0.3 80,829 + EX28DRAFT_4275 0.87 +0.9 80,830 - EX28DRAFT_4275 0.87 +0.6 80,906 + +1.6 80,910 + +0.3 80,910 + -0.0 80,910 + -0.5 80,911 - +0.3 80,911 - -1.0 80,911 - +0.3 80,949 - +1.6 80,977 + -0.6 81,174 + EX28DRAFT_4276 0.13 -0.9 81,175 - EX28DRAFT_4276 0.13 -0.3
Or see this region's nucleotide sequence