Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4264 and EX28DRAFT_4265 are separated by 172 nucleotides EX28DRAFT_4265 and EX28DRAFT_4266 are separated by 115 nucleotides EX28DRAFT_4266 and EX28DRAFT_4267 are separated by 69 nucleotides EX28DRAFT_4267 and EX28DRAFT_4268 are separated by 117 nucleotides
EX28DRAFT_4264: EX28DRAFT_4264 - F plasmid transfer operon, TraF, protein, at 68,948 to 70,258
_4264
EX28DRAFT_4265: EX28DRAFT_4265 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 70,431 to 70,919
_4265
EX28DRAFT_4266: EX28DRAFT_4266 - Fe2+/Zn2+ uptake regulation proteins, at 71,035 to 71,547
_4266
EX28DRAFT_4267: EX28DRAFT_4267 - Uncharacterized protein conserved in bacteria, at 71,617 to 71,829
_4267
EX28DRAFT_4268: EX28DRAFT_4268 - putative efflux protein, MATE family, at 71,947 to 73,284
_4268
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.123 kb on - strand, within EX28DRAFT_4264 at 70.123 kb on - strand, within EX28DRAFT_4264 at 70.181 kb on - strand at 70.272 kb on + strand at 70.272 kb on + strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.323 kb on + strand at 70.336 kb on - strand at 70.339 kb on + strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.371 kb on - strand at 70.371 kb on - strand at 70.414 kb on - strand at 70.513 kb on + strand, within EX28DRAFT_4265 at 70.513 kb on + strand, within EX28DRAFT_4265 at 70.515 kb on + strand, within EX28DRAFT_4265 at 70.516 kb on - strand, within EX28DRAFT_4265 at 70.535 kb on - strand, within EX28DRAFT_4265 at 70.535 kb on - strand, within EX28DRAFT_4265 at 70.535 kb on - strand, within EX28DRAFT_4265 at 70.672 kb on + strand, within EX28DRAFT_4265 at 70.673 kb on - strand, within EX28DRAFT_4265 at 70.712 kb on - strand, within EX28DRAFT_4265 at 70.747 kb on + strand, within EX28DRAFT_4265 at 70.747 kb on + strand, within EX28DRAFT_4265 at 70.787 kb on + strand, within EX28DRAFT_4265 at 70.924 kb on + strand at 70.924 kb on + strand at 70.925 kb on - strand at 70.953 kb on - strand at 70.953 kb on - strand at 70.995 kb on - strand at 71.015 kb on + strand at 71.015 kb on + strand at 71.040 kb on + strand at 71.389 kb on - strand, within EX28DRAFT_4266 at 71.391 kb on + strand, within EX28DRAFT_4266 at 71.392 kb on - strand, within EX28DRAFT_4266 at 71.587 kb on + strand at 71.587 kb on + strand at 71.588 kb on - strand at 71.598 kb on - strand at 71.627 kb on + strand at 71.654 kb on - strand, within EX28DRAFT_4267 at 71.742 kb on + strand, within EX28DRAFT_4267 at 71.821 kb on - strand at 72.132 kb on + strand, within EX28DRAFT_4268 at 72.183 kb on - strand, within EX28DRAFT_4268 at 72.265 kb on - strand, within EX28DRAFT_4268 at 72.265 kb on - strand, within EX28DRAFT_4268 at 72.389 kb on + strand, within EX28DRAFT_4268 at 72.412 kb on + strand, within EX28DRAFT_4268 at 72.420 kb on - strand, within EX28DRAFT_4268
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 70,123 - EX28DRAFT_4264 0.90 -0.3 70,123 - EX28DRAFT_4264 0.90 +0.6 70,181 - +0.3 70,272 + +0.2 70,272 + +0.1 70,273 - +0.0 70,273 - -0.6 70,273 - +0.8 70,323 + -0.7 70,336 - -0.0 70,339 + +0.3 70,340 - -0.1 70,340 - -0.2 70,371 - -0.6 70,371 - -0.5 70,414 - -0.6 70,513 + EX28DRAFT_4265 0.17 -0.1 70,513 + EX28DRAFT_4265 0.17 -0.2 70,515 + EX28DRAFT_4265 0.17 +0.2 70,516 - EX28DRAFT_4265 0.17 +0.0 70,535 - EX28DRAFT_4265 0.21 +2.1 70,535 - EX28DRAFT_4265 0.21 +0.0 70,535 - EX28DRAFT_4265 0.21 -0.3 70,672 + EX28DRAFT_4265 0.49 +0.1 70,673 - EX28DRAFT_4265 0.49 +0.1 70,712 - EX28DRAFT_4265 0.57 +0.8 70,747 + EX28DRAFT_4265 0.65 -0.1 70,747 + EX28DRAFT_4265 0.65 -0.7 70,787 + EX28DRAFT_4265 0.73 -0.4 70,924 + -0.8 70,924 + -0.6 70,925 - +0.6 70,953 - +0.1 70,953 - -0.4 70,995 - +0.5 71,015 + -0.5 71,015 + +0.1 71,040 + -0.9 71,389 - EX28DRAFT_4266 0.69 -0.6 71,391 + EX28DRAFT_4266 0.69 -2.5 71,392 - EX28DRAFT_4266 0.70 -1.6 71,587 + -0.4 71,587 + -0.1 71,588 - -0.2 71,598 - +0.5 71,627 + +0.2 71,654 - EX28DRAFT_4267 0.17 +0.4 71,742 + EX28DRAFT_4267 0.59 +0.6 71,821 - -1.5 72,132 + EX28DRAFT_4268 0.14 -1.1 72,183 - EX28DRAFT_4268 0.18 -0.8 72,265 - EX28DRAFT_4268 0.24 +0.7 72,265 - EX28DRAFT_4268 0.24 -0.3 72,389 + EX28DRAFT_4268 0.33 -0.2 72,412 + EX28DRAFT_4268 0.35 -0.6 72,420 - EX28DRAFT_4268 0.35 +1.3
Or see this region's nucleotide sequence