Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4219 and EX28DRAFT_4220 are separated by 10 nucleotides EX28DRAFT_4220 and EX28DRAFT_4221 overlap by 1 nucleotides EX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotides EX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotides
EX28DRAFT_4219: EX28DRAFT_4219 - ABC-type sugar transport system, auxiliary component, at 26,340 to 27,026
_4219
EX28DRAFT_4220: EX28DRAFT_4220 - ketose-bisphosphate aldolase, at 27,037 to 27,897
_4220
EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910
_4221
EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729
_4222
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.956 kb on - strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 27.007 kb on - strand at 27.007 kb on - strand at 27.024 kb on + strand at 27.025 kb on - strand at 27.025 kb on - strand at 27.025 kb on - strand at 27.032 kb on - strand at 27.032 kb on - strand at 27.198 kb on + strand, within EX28DRAFT_4220 at 27.199 kb on - strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.203 kb on - strand, within EX28DRAFT_4220 at 27.355 kb on - strand, within EX28DRAFT_4220 at 27.364 kb on + strand, within EX28DRAFT_4220 at 27.365 kb on - strand, within EX28DRAFT_4220 at 27.586 kb on + strand, within EX28DRAFT_4220 at 27.586 kb on + strand, within EX28DRAFT_4220 at 27.799 kb on + strand, within EX28DRAFT_4220 at 27.800 kb on - strand, within EX28DRAFT_4220 at 27.992 kb on + strand at 28.488 kb on + strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.562 kb on + strand, within EX28DRAFT_4221 at 28.797 kb on + strand, within EX28DRAFT_4221 at 28.798 kb on - strand, within EX28DRAFT_4221 at 28.892 kb on + strand at 28.913 kb on + strand at 28.931 kb on + strand at 28.942 kb on + strand at 28.964 kb on + strand at 28.985 kb on - strand at 29.108 kb on + strand at 29.108 kb on + strand at 29.109 kb on - strand at 29.294 kb on + strand, within EX28DRAFT_4222 at 29.343 kb on + strand, within EX28DRAFT_4222 at 29.437 kb on - strand, within EX28DRAFT_4222 at 29.439 kb on - strand, within EX28DRAFT_4222 at 29.441 kb on - strand, within EX28DRAFT_4222 at 29.444 kb on + strand, within EX28DRAFT_4222 at 29.445 kb on - strand, within EX28DRAFT_4222 at 29.484 kb on + strand, within EX28DRAFT_4222 at 29.489 kb on - strand, within EX28DRAFT_4222 at 29.637 kb on + strand, within EX28DRAFT_4222 at 29.638 kb on - strand, within EX28DRAFT_4222 at 29.770 kb on + strand at 29.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 26,956 - EX28DRAFT_4219 0.90 +0.5 26,957 + EX28DRAFT_4219 0.90 +0.3 26,957 + EX28DRAFT_4219 0.90 -0.4 26,957 + EX28DRAFT_4219 0.90 +0.1 27,007 - +1.1 27,007 - +1.1 27,024 + -0.6 27,025 - -1.5 27,025 - +0.4 27,025 - +0.8 27,032 - +0.6 27,032 - +0.2 27,198 + EX28DRAFT_4220 0.19 +0.3 27,199 - EX28DRAFT_4220 0.19 -0.4 27,202 + EX28DRAFT_4220 0.19 -0.9 27,202 + EX28DRAFT_4220 0.19 +0.3 27,202 + EX28DRAFT_4220 0.19 +0.2 27,202 + EX28DRAFT_4220 0.19 -0.4 27,203 - EX28DRAFT_4220 0.19 +0.0 27,355 - EX28DRAFT_4220 0.37 -1.1 27,364 + EX28DRAFT_4220 0.38 +0.6 27,365 - EX28DRAFT_4220 0.38 -0.3 27,586 + EX28DRAFT_4220 0.64 -0.3 27,586 + EX28DRAFT_4220 0.64 -0.6 27,799 + EX28DRAFT_4220 0.89 +0.5 27,800 - EX28DRAFT_4220 0.89 +0.1 27,992 + +1.0 28,488 + EX28DRAFT_4221 0.58 +0.3 28,489 - EX28DRAFT_4221 0.58 +0.7 28,489 - EX28DRAFT_4221 0.58 +0.2 28,562 + EX28DRAFT_4221 0.66 +0.3 28,797 + EX28DRAFT_4221 0.89 +1.1 28,798 - EX28DRAFT_4221 0.89 +0.1 28,892 + +0.4 28,913 + +0.6 28,931 + -0.3 28,942 + +0.3 28,964 + +0.2 28,985 - -0.0 29,108 + -0.7 29,108 + -0.0 29,109 - -0.2 29,294 + EX28DRAFT_4222 0.25 +0.8 29,343 + EX28DRAFT_4222 0.33 +0.7 29,437 - EX28DRAFT_4222 0.49 -0.4 29,439 - EX28DRAFT_4222 0.50 +1.1 29,441 - EX28DRAFT_4222 0.50 +0.3 29,444 + EX28DRAFT_4222 0.51 +0.2 29,445 - EX28DRAFT_4222 0.51 -0.1 29,484 + EX28DRAFT_4222 0.58 +0.4 29,489 - EX28DRAFT_4222 0.58 -0.5 29,637 + EX28DRAFT_4222 0.84 -0.6 29,638 - EX28DRAFT_4222 0.84 +0.0 29,770 + -0.0 29,849 - -0.1
Or see this region's nucleotide sequence