Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4177

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4176 and EX28DRAFT_4177 are separated by 112 nucleotidesEX28DRAFT_4177 and EX28DRAFT_4178 are separated by 138 nucleotidesEX28DRAFT_4178 and EX28DRAFT_4179 overlap by 1 nucleotides EX28DRAFT_4176: EX28DRAFT_4176 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 158,824 to 159,846 _4176 EX28DRAFT_4177: EX28DRAFT_4177 - ATPase components of ABC transporters with duplicated ATPase domains, at 159,959 to 161,863 _4177 EX28DRAFT_4178: EX28DRAFT_4178 - Putative NADPH-quinone reductase (modulator of drug activity B), at 162,002 to 162,553 _4178 EX28DRAFT_4179: EX28DRAFT_4179 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 162,553 to 164,358 _4179 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 159.021 kb on + strand, within EX28DRAFT_4176at 159.021 kb on + strand, within EX28DRAFT_4176at 159.078 kb on - strand, within EX28DRAFT_4176at 159.440 kb on - strand, within EX28DRAFT_4176at 159.440 kb on - strand, within EX28DRAFT_4176at 159.477 kb on - strand, within EX28DRAFT_4176at 159.630 kb on + strand, within EX28DRAFT_4176at 159.784 kb on - strandat 159.846 kb on + strandat 159.881 kb on + strandat 159.882 kb on - strandat 159.904 kb on + strandat 159.952 kb on - strandat 159.955 kb on + strandat 159.956 kb on - strandat 160.092 kb on + strandat 160.321 kb on - strand, within EX28DRAFT_4177at 160.371 kb on + strand, within EX28DRAFT_4177at 160.371 kb on + strand, within EX28DRAFT_4177at 160.372 kb on - strand, within EX28DRAFT_4177at 160.372 kb on - strand, within EX28DRAFT_4177at 160.728 kb on + strand, within EX28DRAFT_4177at 160.886 kb on - strand, within EX28DRAFT_4177at 161.118 kb on + strand, within EX28DRAFT_4177at 161.119 kb on - strand, within EX28DRAFT_4177at 161.172 kb on + strand, within EX28DRAFT_4177at 161.172 kb on + strand, within EX28DRAFT_4177at 161.173 kb on - strand, within EX28DRAFT_4177at 161.280 kb on + strand, within EX28DRAFT_4177at 161.309 kb on - strand, within EX28DRAFT_4177at 161.389 kb on + strand, within EX28DRAFT_4177at 161.390 kb on - strand, within EX28DRAFT_4177at 161.390 kb on - strand, within EX28DRAFT_4177at 161.398 kb on + strand, within EX28DRAFT_4177at 161.465 kb on + strand, within EX28DRAFT_4177at 161.617 kb on - strand, within EX28DRAFT_4177at 161.617 kb on - strand, within EX28DRAFT_4177at 161.690 kb on - strandat 161.798 kb on - strandat 161.863 kb on + strandat 161.864 kb on - strandat 161.864 kb on - strandat 161.886 kb on - strandat 161.886 kb on - strandat 161.890 kb on + strandat 161.890 kb on + strandat 161.891 kb on - strandat 161.907 kb on - strandat 161.907 kb on - strandat 161.911 kb on + strandat 161.911 kb on + strandat 161.911 kb on + strandat 161.912 kb on - strandat 161.912 kb on - strandat 161.912 kb on - strandat 161.912 kb on - strandat 162.032 kb on + strandat 162.033 kb on - strandat 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.220 kb on + strand, within EX28DRAFT_4178at 162.220 kb on + strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.451 kb on + strand, within EX28DRAFT_4178at 162.510 kb on - strandat 162.570 kb on - strandat 162.813 kb on - strand, within EX28DRAFT_4179at 162.813 kb on - strand, within EX28DRAFT_4179

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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159,021 + EX28DRAFT_4176 0.19 +0.2
159,021 + EX28DRAFT_4176 0.19 -0.0
159,078 - EX28DRAFT_4176 0.25 -0.4
159,440 - EX28DRAFT_4176 0.60 -0.1
159,440 - EX28DRAFT_4176 0.60 -0.8
159,477 - EX28DRAFT_4176 0.64 +0.9
159,630 + EX28DRAFT_4176 0.79 -0.5
159,784 - -0.2
159,846 + -0.6
159,881 + +0.1
159,882 - +0.2
159,904 + +0.1
159,952 - -0.5
159,955 + -0.6
159,956 - +0.6
160,092 + -0.2
160,321 - EX28DRAFT_4177 0.19 +0.3
160,371 + EX28DRAFT_4177 0.22 +0.6
160,371 + EX28DRAFT_4177 0.22 +1.1
160,372 - EX28DRAFT_4177 0.22 +0.3
160,372 - EX28DRAFT_4177 0.22 +0.0
160,728 + EX28DRAFT_4177 0.40 +0.5
160,886 - EX28DRAFT_4177 0.49 +1.3
161,118 + EX28DRAFT_4177 0.61 +0.5
161,119 - EX28DRAFT_4177 0.61 -0.5
161,172 + EX28DRAFT_4177 0.64 +0.3
161,172 + EX28DRAFT_4177 0.64 +1.5
161,173 - EX28DRAFT_4177 0.64 +0.1
161,280 + EX28DRAFT_4177 0.69 +0.3
161,309 - EX28DRAFT_4177 0.71 +0.4
161,389 + EX28DRAFT_4177 0.75 +0.6
161,390 - EX28DRAFT_4177 0.75 -0.0
161,390 - EX28DRAFT_4177 0.75 +0.9
161,398 + EX28DRAFT_4177 0.76 +0.5
161,465 + EX28DRAFT_4177 0.79 -0.3
161,617 - EX28DRAFT_4177 0.87 +0.1
161,617 - EX28DRAFT_4177 0.87 +0.4
161,690 - +0.2
161,798 - -0.4
161,863 + +0.5
161,864 - +0.1
161,864 - -0.4
161,886 - -0.4
161,886 - -1.1
161,890 + -0.1
161,890 + +0.3
161,891 - +0.1
161,907 - -0.8
161,907 - +0.0
161,911 + +0.4
161,911 + +0.5
161,911 + +0.7
161,912 - +0.2
161,912 - -0.6
161,912 - +0.2
161,912 - +1.0
162,032 + -0.3
162,033 - -0.2
162,214 + EX28DRAFT_4178 0.38 -0.4
162,214 + EX28DRAFT_4178 0.38 +0.1
162,214 + EX28DRAFT_4178 0.38 -0.5
162,214 + EX28DRAFT_4178 0.38 -0.1
162,215 - EX28DRAFT_4178 0.39 -0.3
162,215 - EX28DRAFT_4178 0.39 +0.9
162,215 - EX28DRAFT_4178 0.39 +0.3
162,218 + EX28DRAFT_4178 0.39 -0.6
162,218 + EX28DRAFT_4178 0.39 -0.2
162,218 + EX28DRAFT_4178 0.39 -0.4
162,218 + EX28DRAFT_4178 0.39 -0.0
162,218 + EX28DRAFT_4178 0.39 -0.4
162,218 + EX28DRAFT_4178 0.39 -0.6
162,218 + EX28DRAFT_4178 0.39 -2.4
162,218 + EX28DRAFT_4178 0.39 -1.0
162,218 + EX28DRAFT_4178 0.39 -0.0
162,218 + EX28DRAFT_4178 0.39 +0.9
162,219 - EX28DRAFT_4178 0.39 -0.4
162,219 - EX28DRAFT_4178 0.39 +1.0
162,219 - EX28DRAFT_4178 0.39 -0.2
162,219 - EX28DRAFT_4178 0.39 -0.2
162,219 - EX28DRAFT_4178 0.39 -0.4
162,219 - EX28DRAFT_4178 0.39 -0.2
162,219 - EX28DRAFT_4178 0.39 -0.0
162,219 - EX28DRAFT_4178 0.39 -0.4
162,219 - EX28DRAFT_4178 0.39 -0.1
162,219 - EX28DRAFT_4178 0.39 +0.6
162,219 - EX28DRAFT_4178 0.39 -0.1
162,219 - EX28DRAFT_4178 0.39 +1.0
162,219 - EX28DRAFT_4178 0.39 -0.2
162,220 + EX28DRAFT_4178 0.39 -0.2
162,220 + EX28DRAFT_4178 0.39 -0.3
162,221 - EX28DRAFT_4178 0.40 -0.3
162,221 - EX28DRAFT_4178 0.40 -0.1
162,221 - EX28DRAFT_4178 0.40 +0.0
162,451 + EX28DRAFT_4178 0.81 -0.6
162,510 - -0.1
162,570 - +0.7
162,813 - EX28DRAFT_4179 0.14 -1.4
162,813 - EX28DRAFT_4179 0.14 -0.2

Or see this region's nucleotide sequence