Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4167

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4165 and EX28DRAFT_4166 are separated by 106 nucleotidesEX28DRAFT_4166 and EX28DRAFT_4167 overlap by 11 nucleotidesEX28DRAFT_4167 and EX28DRAFT_4168 are separated by 101 nucleotides EX28DRAFT_4165: EX28DRAFT_4165 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 147,613 to 148,185 _4165 EX28DRAFT_4166: EX28DRAFT_4166 - Protein of unknown function (DUF2559), at 148,292 to 148,459 _4166 EX28DRAFT_4167: EX28DRAFT_4167 - Protein involved in cell division, at 148,449 to 149,042 _4167 EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260 _4168 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1 2at 147.586 kb on + strandat 147.586 kb on + strandat 147.587 kb on - strandat 147.589 kb on - strandat 147.805 kb on + strand, within EX28DRAFT_4165at 147.805 kb on + strand, within EX28DRAFT_4165at 147.844 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.975 kb on + strand, within EX28DRAFT_4165at 148.222 kb on + strandat 148.223 kb on - strandat 148.223 kb on - strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.255 kb on - strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.257 kb on - strandat 148.257 kb on - strandat 148.343 kb on - strand, within EX28DRAFT_4166at 148.343 kb on - strand, within EX28DRAFT_4166at 148.346 kb on - strand, within EX28DRAFT_4166at 148.408 kb on - strand, within EX28DRAFT_4166at 148.416 kb on + strand, within EX28DRAFT_4166at 148.416 kb on + strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.448 kb on + strandat 148.449 kb on - strandat 148.483 kb on - strandat 148.489 kb on - strandat 148.594 kb on + strand, within EX28DRAFT_4167at 148.595 kb on - strand, within EX28DRAFT_4167at 148.595 kb on - strand, within EX28DRAFT_4167at 148.692 kb on - strand, within EX28DRAFT_4167at 148.695 kb on + strand, within EX28DRAFT_4167at 148.696 kb on - strand, within EX28DRAFT_4167at 148.706 kb on + strand, within EX28DRAFT_4167at 148.728 kb on + strand, within EX28DRAFT_4167at 148.729 kb on - strand, within EX28DRAFT_4167at 148.729 kb on - strand, within EX28DRAFT_4167at 148.730 kb on + strand, within EX28DRAFT_4167at 148.792 kb on + strand, within EX28DRAFT_4167at 148.796 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 149.012 kb on - strandat 149.012 kb on - strandat 149.040 kb on + strandat 149.040 kb on + strandat 149.040 kb on + strandat 149.041 kb on - strandat 149.047 kb on + strandat 149.048 kb on - strandat 149.048 kb on - strandat 149.048 kb on - strandat 149.158 kb on + strandat 149.159 kb on - strandat 149.200 kb on - strandat 149.200 kb on - strandat 149.306 kb on - strandat 149.316 kb on - strandat 149.316 kb on - strandat 149.319 kb on + strandat 149.319 kb on + strandat 149.320 kb on - strandat 149.320 kb on - strandat 149.320 kb on - strandat 149.337 kb on - strandat 149.343 kb on + strandat 149.343 kb on + strandat 149.343 kb on + strandat 149.344 kb on - strandat 149.344 kb on - strandat 149.390 kb on + strandat 149.390 kb on + strandat 149.449 kb on + strandat 149.449 kb on + strandat 149.449 kb on + strandat 149.450 kb on - strandat 149.452 kb on + strandat 149.548 kb on - strand, within EX28DRAFT_4168at 149.599 kb on + strand, within EX28DRAFT_4168at 149.637 kb on + strand, within EX28DRAFT_4168at 149.637 kb on + strand, within EX28DRAFT_4168at 149.637 kb on + strand, within EX28DRAFT_4168at 149.638 kb on - strand, within EX28DRAFT_4168at 149.658 kb on + strand, within EX28DRAFT_4168at 149.659 kb on - strand, within EX28DRAFT_4168at 149.808 kb on - strand, within EX28DRAFT_4168at 149.836 kb on + strand, within EX28DRAFT_4168at 149.841 kb on + strand, within EX28DRAFT_4168at 149.842 kb on - strand, within EX28DRAFT_4168at 149.878 kb on + strand, within EX28DRAFT_4168at 149.881 kb on + strand, within EX28DRAFT_4168at 149.890 kb on - strand, within EX28DRAFT_4168at 149.896 kb on + strand, within EX28DRAFT_4168at 149.897 kb on - strand, within EX28DRAFT_4168at 149.899 kb on - strand, within EX28DRAFT_4168at 149.899 kb on - strand, within EX28DRAFT_4168at 149.902 kb on - strand, within EX28DRAFT_4168at 149.922 kb on + strand, within EX28DRAFT_4168at 149.929 kb on + strand, within EX28DRAFT_4168at 149.929 kb on + strand, within EX28DRAFT_4168at 149.929 kb on + strand, within EX28DRAFT_4168at 149.930 kb on - strand, within EX28DRAFT_4168at 149.930 kb on - strand, within EX28DRAFT_4168at 149.995 kb on + strand, within EX28DRAFT_4168at 149.996 kb on - strand, within EX28DRAFT_4168at 149.996 kb on - strand, within EX28DRAFT_4168

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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147,586 + -0.3
147,586 + -0.3
147,587 - +1.2
147,589 - -0.4
147,805 + EX28DRAFT_4165 0.34 +0.3
147,805 + EX28DRAFT_4165 0.34 +1.0
147,844 - EX28DRAFT_4165 0.40 +0.3
147,904 - EX28DRAFT_4165 0.51 +0.4
147,904 - EX28DRAFT_4165 0.51 -0.1
147,975 + EX28DRAFT_4165 0.63 -0.1
148,222 + -0.3
148,223 - +0.7
148,223 - -0.0
148,254 + +0.3
148,254 + +1.0
148,254 + +0.8
148,254 + -0.0
148,255 - -0.6
148,256 + -1.7
148,256 + -0.4
148,256 + +0.1
148,256 + -0.7
148,256 + +0.6
148,256 + -0.1
148,256 + +0.1
148,256 + -0.1
148,257 - +0.9
148,257 - +0.7
148,343 - EX28DRAFT_4166 0.30 +0.5
148,343 - EX28DRAFT_4166 0.30 +0.1
148,346 - EX28DRAFT_4166 0.32 -0.7
148,408 - EX28DRAFT_4166 0.69 +0.2
148,416 + EX28DRAFT_4166 0.74 -0.2
148,416 + EX28DRAFT_4166 0.74 -1.3
148,417 - EX28DRAFT_4166 0.74 -0.7
148,417 - EX28DRAFT_4166 0.74 -0.6
148,417 - EX28DRAFT_4166 0.74 -0.2
148,448 + -0.0
148,449 - -0.2
148,483 - -0.1
148,489 - +0.8
148,594 + EX28DRAFT_4167 0.24 +0.4
148,595 - EX28DRAFT_4167 0.25 -1.1
148,595 - EX28DRAFT_4167 0.25 +0.2
148,692 - EX28DRAFT_4167 0.41 +0.4
148,695 + EX28DRAFT_4167 0.41 -0.1
148,696 - EX28DRAFT_4167 0.42 +0.2
148,706 + EX28DRAFT_4167 0.43 -0.1
148,728 + EX28DRAFT_4167 0.47 +0.2
148,729 - EX28DRAFT_4167 0.47 -0.0
148,729 - EX28DRAFT_4167 0.47 -0.5
148,730 + EX28DRAFT_4167 0.47 +0.4
148,792 + EX28DRAFT_4167 0.58 +0.1
148,796 + EX28DRAFT_4167 0.58 -0.3
148,949 + EX28DRAFT_4167 0.84 +0.0
148,949 + EX28DRAFT_4167 0.84 +0.5
148,949 + EX28DRAFT_4167 0.84 +0.4
148,949 + EX28DRAFT_4167 0.84 +0.2
148,949 + EX28DRAFT_4167 0.84 +1.3
148,950 - EX28DRAFT_4167 0.84 -0.6
148,950 - EX28DRAFT_4167 0.84 +2.3
148,950 - EX28DRAFT_4167 0.84 -0.6
148,950 - EX28DRAFT_4167 0.84 +0.3
148,950 - EX28DRAFT_4167 0.84 +0.7
148,950 - EX28DRAFT_4167 0.84 +0.1
149,012 - +0.0
149,012 - +0.0
149,040 + +0.1
149,040 + -0.2
149,040 + +0.6
149,041 - +0.4
149,047 + -0.1
149,048 - -0.1
149,048 - +0.1
149,048 - +0.0
149,158 + +0.3
149,159 - +0.5
149,200 - -0.5
149,200 - -0.1
149,306 - +1.6
149,316 - +0.2
149,316 - -0.2
149,319 + -1.3
149,319 + +0.2
149,320 - +0.2
149,320 - +0.3
149,320 - +0.2
149,337 - +0.2
149,343 + +0.2
149,343 + +0.0
149,343 + +0.6
149,344 - -0.0
149,344 - -0.8
149,390 + +0.1
149,390 + -0.4
149,449 + +0.3
149,449 + -0.3
149,449 + -0.3
149,450 - +0.4
149,452 + +1.3
149,548 - EX28DRAFT_4168 0.13 +1.1
149,599 + EX28DRAFT_4168 0.15 -0.1
149,637 + EX28DRAFT_4168 0.16 +0.0
149,637 + EX28DRAFT_4168 0.16 -0.2
149,637 + EX28DRAFT_4168 0.16 -0.3
149,638 - EX28DRAFT_4168 0.16 -1.3
149,658 + EX28DRAFT_4168 0.16 +0.1
149,659 - EX28DRAFT_4168 0.17 -0.1
149,808 - EX28DRAFT_4168 0.21 -0.0
149,836 + EX28DRAFT_4168 0.22 -0.1
149,841 + EX28DRAFT_4168 0.22 -0.4
149,842 - EX28DRAFT_4168 0.22 -1.2
149,878 + EX28DRAFT_4168 0.24 -1.0
149,881 + EX28DRAFT_4168 0.24 -0.8
149,890 - EX28DRAFT_4168 0.24 -0.3
149,896 + EX28DRAFT_4168 0.24 +0.6
149,897 - EX28DRAFT_4168 0.24 -0.4
149,899 - EX28DRAFT_4168 0.24 -0.1
149,899 - EX28DRAFT_4168 0.24 +0.0
149,902 - EX28DRAFT_4168 0.24 +2.4
149,922 + EX28DRAFT_4168 0.25 +0.5
149,929 + EX28DRAFT_4168 0.25 +0.5
149,929 + EX28DRAFT_4168 0.25 -0.4
149,929 + EX28DRAFT_4168 0.25 -0.2
149,930 - EX28DRAFT_4168 0.25 -1.4
149,930 - EX28DRAFT_4168 0.25 -0.5
149,995 + EX28DRAFT_4168 0.27 -0.3
149,996 - EX28DRAFT_4168 0.27 -0.0
149,996 - EX28DRAFT_4168 0.27 +0.3

Or see this region's nucleotide sequence