Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4156 and EX28DRAFT_4157 overlap by 8 nucleotides EX28DRAFT_4157 and EX28DRAFT_4158 overlap by 8 nucleotides EX28DRAFT_4158 and EX28DRAFT_4159 are separated by 144 nucleotides EX28DRAFT_4159 and EX28DRAFT_4160 are separated by 142 nucleotides
EX28DRAFT_4156: EX28DRAFT_4156 - ribulose-phosphate 3-epimerase, at 137,329 to 138,006
_4156
EX28DRAFT_4157: EX28DRAFT_4157 - 2-phosphoglycolate phosphatase, prokaryotic, at 137,999 to 138,760
_4157
EX28DRAFT_4158: EX28DRAFT_4158 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 138,753 to 139,757
_4158
EX28DRAFT_4159: EX28DRAFT_4159 - Protein of unknown function (DUF4223), at 139,902 to 140,072
_4159
EX28DRAFT_4160: EX28DRAFT_4160 - uroporphyrin-III C-methyltransferase, at 140,215 to 141,588
_4160
Position (kb)
138
139
140 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 137.993 kb on + strand at 137.993 kb on + strand at 138.004 kb on + strand at 138.099 kb on - strand, within EX28DRAFT_4157 at 138.099 kb on - strand, within EX28DRAFT_4157 at 138.138 kb on + strand, within EX28DRAFT_4157 at 138.138 kb on + strand, within EX28DRAFT_4157 at 138.139 kb on - strand, within EX28DRAFT_4157 at 138.259 kb on + strand, within EX28DRAFT_4157 at 138.305 kb on + strand, within EX28DRAFT_4157 at 138.458 kb on + strand, within EX28DRAFT_4157 at 138.458 kb on + strand, within EX28DRAFT_4157 at 138.543 kb on - strand, within EX28DRAFT_4157 at 138.589 kb on + strand, within EX28DRAFT_4157 at 138.590 kb on - strand, within EX28DRAFT_4157 at 138.636 kb on - strand, within EX28DRAFT_4157 at 138.636 kb on - strand, within EX28DRAFT_4157 at 138.647 kb on + strand, within EX28DRAFT_4157 at 138.647 kb on + strand, within EX28DRAFT_4157 at 138.666 kb on + strand, within EX28DRAFT_4157 at 138.774 kb on - strand at 138.813 kb on + strand at 138.814 kb on - strand at 139.051 kb on - strand, within EX28DRAFT_4158 at 139.051 kb on - strand, within EX28DRAFT_4158 at 139.101 kb on + strand, within EX28DRAFT_4158 at 139.777 kb on + strand at 139.777 kb on + strand at 139.778 kb on - strand at 139.778 kb on - strand at 139.778 kb on - strand at 139.903 kb on + strand at 139.969 kb on + strand, within EX28DRAFT_4159 at 139.970 kb on - strand, within EX28DRAFT_4159 at 139.975 kb on + strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.986 kb on - strand, within EX28DRAFT_4159 at 140.002 kb on - strand, within EX28DRAFT_4159 at 140.088 kb on + strand at 140.106 kb on + strand at 140.148 kb on - strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.303 kb on - strand at 140.303 kb on - strand at 140.447 kb on + strand, within EX28DRAFT_4160 at 140.448 kb on - strand, within EX28DRAFT_4160 at 140.448 kb on - strand, within EX28DRAFT_4160 at 140.599 kb on - strand, within EX28DRAFT_4160
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 137,993 + -0.5 137,993 + +0.3 138,004 + -0.8 138,099 - EX28DRAFT_4157 0.13 -0.6 138,099 - EX28DRAFT_4157 0.13 -1.8 138,138 + EX28DRAFT_4157 0.18 -0.4 138,138 + EX28DRAFT_4157 0.18 -0.0 138,139 - EX28DRAFT_4157 0.18 -2.9 138,259 + EX28DRAFT_4157 0.34 +0.4 138,305 + EX28DRAFT_4157 0.40 +0.4 138,458 + EX28DRAFT_4157 0.60 -0.6 138,458 + EX28DRAFT_4157 0.60 -0.6 138,543 - EX28DRAFT_4157 0.71 -0.6 138,589 + EX28DRAFT_4157 0.77 -0.4 138,590 - EX28DRAFT_4157 0.78 -1.3 138,636 - EX28DRAFT_4157 0.84 -3.0 138,636 - EX28DRAFT_4157 0.84 -2.2 138,647 + EX28DRAFT_4157 0.85 -0.9 138,647 + EX28DRAFT_4157 0.85 -0.5 138,666 + EX28DRAFT_4157 0.88 -0.5 138,774 - -1.7 138,813 + -2.1 138,814 - -0.0 139,051 - EX28DRAFT_4158 0.30 -2.7 139,051 - EX28DRAFT_4158 0.30 -2.9 139,101 + EX28DRAFT_4158 0.35 -1.7 139,777 + +0.3 139,777 + +0.7 139,778 - -0.1 139,778 - +0.4 139,778 - -0.5 139,903 + -0.0 139,969 + EX28DRAFT_4159 0.39 +0.2 139,970 - EX28DRAFT_4159 0.40 +1.4 139,975 + EX28DRAFT_4159 0.43 -1.2 139,976 - EX28DRAFT_4159 0.43 -0.5 139,976 - EX28DRAFT_4159 0.43 -0.3 139,976 - EX28DRAFT_4159 0.43 +0.5 139,986 - EX28DRAFT_4159 0.49 -0.1 140,002 - EX28DRAFT_4159 0.58 +1.3 140,088 + -0.2 140,106 + -0.0 140,148 - -0.5 140,209 + -0.2 140,210 - -0.0 140,210 - +0.4 140,303 - +0.4 140,303 - -1.3 140,447 + EX28DRAFT_4160 0.17 +0.2 140,448 - EX28DRAFT_4160 0.17 -0.2 140,448 - EX28DRAFT_4160 0.17 -0.8 140,599 - EX28DRAFT_4160 0.28 +0.3
Or see this region's nucleotide sequence