Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4131

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4129 and EX28DRAFT_4130 are separated by 36 nucleotidesEX28DRAFT_4130 and EX28DRAFT_4131 are separated by 111 nucleotidesEX28DRAFT_4131 and EX28DRAFT_4132 are separated by 33 nucleotidesEX28DRAFT_4132 and EX28DRAFT_4133 are separated by 10 nucleotides EX28DRAFT_4129: EX28DRAFT_4129 - Predicted amidophosphoribosyltransferases, at 109,548 to 110,231 _4129 EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041 _4130 EX28DRAFT_4131: EX28DRAFT_4131 - Protein of unknown function (DUF1471), at 111,153 to 111,422 _4131 EX28DRAFT_4132: EX28DRAFT_4132 - FeoC like transcriptional regulator, at 111,456 to 111,692 _4132 EX28DRAFT_4133: EX28DRAFT_4133 - ferrous iron transporter FeoB, at 111,703 to 114,021 _4133 Position (kb) 111 112Strain fitness (log2 ratio) -1 0 1at 110.262 kb on + strandat 110.262 kb on + strandat 110.262 kb on + strandat 110.263 kb on - strandat 110.350 kb on + strand, within EX28DRAFT_4130at 110.350 kb on + strand, within EX28DRAFT_4130at 110.351 kb on - strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.362 kb on + strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130at 110.363 kb on - strand, within EX28DRAFT_4130at 110.687 kb on - strand, within EX28DRAFT_4130at 110.870 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.981 kb on + strandat 110.981 kb on + strandat 110.982 kb on - strandat 111.085 kb on - strandat 111.114 kb on + strandat 111.354 kb on + strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.358 kb on - strand, within EX28DRAFT_4131at 111.414 kb on + strandat 111.414 kb on + strandat 111.415 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.423 kb on + strandat 111.424 kb on - strandat 111.480 kb on + strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.840 kb on + strandat 111.840 kb on + strandat 111.919 kb on + strandat 112.022 kb on + strand, within EX28DRAFT_4133at 112.022 kb on + strand, within EX28DRAFT_4133at 112.028 kb on + strand, within EX28DRAFT_4133at 112.401 kb on + strand, within EX28DRAFT_4133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
110,262 + -0.5
110,262 + -0.2
110,262 + +0.5
110,263 - -0.0
110,350 + EX28DRAFT_4130 0.11 +0.1
110,350 + EX28DRAFT_4130 0.11 -0.9
110,351 - EX28DRAFT_4130 0.11 +0.2
110,362 + EX28DRAFT_4130 0.12 +0.4
110,362 + EX28DRAFT_4130 0.12 -0.3
110,362 + EX28DRAFT_4130 0.12 -0.2
110,363 - EX28DRAFT_4130 0.12 +0.2
110,363 - EX28DRAFT_4130 0.12 -0.0
110,363 - EX28DRAFT_4130 0.12 +0.2
110,687 - EX28DRAFT_4130 0.54 -0.3
110,870 + EX28DRAFT_4130 0.78 +0.8
110,874 + EX28DRAFT_4130 0.78 -1.0
110,874 + EX28DRAFT_4130 0.78 -0.1
110,875 - EX28DRAFT_4130 0.78 +0.3
110,875 - EX28DRAFT_4130 0.78 -0.4
110,875 - EX28DRAFT_4130 0.78 -0.3
110,875 - EX28DRAFT_4130 0.78 +1.5
110,981 + -0.5
110,981 + -0.1
110,982 - -0.6
111,085 - -0.1
111,114 + -0.1
111,354 + EX28DRAFT_4131 0.74 +0.5
111,355 - EX28DRAFT_4131 0.75 +0.7
111,355 - EX28DRAFT_4131 0.75 -0.1
111,357 + EX28DRAFT_4131 0.76 -0.1
111,357 + EX28DRAFT_4131 0.76 -0.0
111,357 + EX28DRAFT_4131 0.76 +0.7
111,358 - EX28DRAFT_4131 0.76 +0.9
111,414 + -0.0
111,414 + -0.2
111,415 - -0.1
111,421 - -0.4
111,421 - -0.6
111,421 - -0.7
111,421 - -0.1
111,423 + +0.7
111,424 - +0.1
111,480 + EX28DRAFT_4132 0.10 +0.2
111,510 - EX28DRAFT_4132 0.23 +0.6
111,510 - EX28DRAFT_4132 0.23 +0.8
111,510 - EX28DRAFT_4132 0.23 -0.2
111,840 + +0.4
111,840 + +0.6
111,919 + +0.1
112,022 + EX28DRAFT_4133 0.14 +1.1
112,022 + EX28DRAFT_4133 0.14 +0.1
112,028 + EX28DRAFT_4133 0.14 +0.4
112,401 + EX28DRAFT_4133 0.30 +0.4

Or see this region's nucleotide sequence