Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4071

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4070 and EX28DRAFT_4071 are separated by 32 nucleotidesEX28DRAFT_4071 and EX28DRAFT_4072 overlap by 1 nucleotidesEX28DRAFT_4072 and EX28DRAFT_4073 are separated by 169 nucleotides EX28DRAFT_4070: EX28DRAFT_4070 - flavoprotein, HI0933 family, at 45,122 to 46,318 _4070 EX28DRAFT_4071: EX28DRAFT_4071 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 46,351 to 47,289 _4071 EX28DRAFT_4072: EX28DRAFT_4072 - Demethylmenaquinone methyltransferase, at 47,289 to 47,981 _4072 EX28DRAFT_4073: EX28DRAFT_4073 - transcriptional regulator, IclR family, at 48,151 to 48,888 _4073 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1at 45.367 kb on + strand, within EX28DRAFT_4070at 45.543 kb on - strand, within EX28DRAFT_4070at 45.581 kb on - strand, within EX28DRAFT_4070at 45.643 kb on + strand, within EX28DRAFT_4070at 45.643 kb on + strand, within EX28DRAFT_4070at 45.644 kb on - strand, within EX28DRAFT_4070at 45.667 kb on + strand, within EX28DRAFT_4070at 45.712 kb on + strand, within EX28DRAFT_4070at 45.713 kb on - strand, within EX28DRAFT_4070at 45.811 kb on + strand, within EX28DRAFT_4070at 46.049 kb on - strand, within EX28DRAFT_4070at 46.254 kb on - strandat 46.321 kb on + strandat 46.322 kb on - strandat 46.322 kb on - strandat 46.322 kb on - strandat 46.389 kb on + strandat 46.389 kb on + strandat 46.390 kb on - strandat 46.390 kb on - strandat 46.419 kb on + strandat 46.419 kb on + strandat 46.419 kb on + strandat 46.421 kb on + strandat 46.421 kb on + strandat 46.422 kb on - strandat 46.422 kb on - strandat 46.447 kb on - strand, within EX28DRAFT_4071at 46.600 kb on - strand, within EX28DRAFT_4071at 46.645 kb on - strand, within EX28DRAFT_4071at 46.758 kb on + strand, within EX28DRAFT_4071at 46.758 kb on + strand, within EX28DRAFT_4071at 46.759 kb on - strand, within EX28DRAFT_4071at 46.772 kb on + strand, within EX28DRAFT_4071at 46.965 kb on + strand, within EX28DRAFT_4071at 46.965 kb on + strand, within EX28DRAFT_4071at 46.966 kb on - strand, within EX28DRAFT_4071at 46.966 kb on - strand, within EX28DRAFT_4071at 47.131 kb on + strand, within EX28DRAFT_4071at 47.131 kb on + strand, within EX28DRAFT_4071at 47.161 kb on - strand, within EX28DRAFT_4071at 47.209 kb on + strandat 47.224 kb on + strandat 47.225 kb on - strandat 47.273 kb on - strandat 47.315 kb on + strandat 47.315 kb on + strandat 47.316 kb on - strandat 47.316 kb on - strandat 47.316 kb on - strandat 47.316 kb on - strandat 47.316 kb on - strandat 47.544 kb on + strand, within EX28DRAFT_4072at 47.590 kb on + strand, within EX28DRAFT_4072at 47.623 kb on - strand, within EX28DRAFT_4072at 47.636 kb on + strand, within EX28DRAFT_4072at 47.636 kb on + strand, within EX28DRAFT_4072at 47.637 kb on - strand, within EX28DRAFT_4072at 47.639 kb on + strand, within EX28DRAFT_4072at 47.639 kb on + strand, within EX28DRAFT_4072at 47.639 kb on + strand, within EX28DRAFT_4072at 47.903 kb on - strand, within EX28DRAFT_4072at 47.981 kb on + strandat 47.981 kb on + strandat 47.982 kb on - strandat 47.982 kb on - strandat 48.059 kb on + strandat 48.088 kb on + strandat 48.088 kb on + strandat 48.089 kb on - strandat 48.118 kb on + strandat 48.147 kb on - strandat 48.170 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
45,367 + EX28DRAFT_4070 0.20 -1.4
45,543 - EX28DRAFT_4070 0.35 -0.6
45,581 - EX28DRAFT_4070 0.38 +0.5
45,643 + EX28DRAFT_4070 0.44 -1.1
45,643 + EX28DRAFT_4070 0.44 -0.1
45,644 - EX28DRAFT_4070 0.44 +1.2
45,667 + EX28DRAFT_4070 0.46 +0.7
45,712 + EX28DRAFT_4070 0.49 +0.5
45,713 - EX28DRAFT_4070 0.49 +0.0
45,811 + EX28DRAFT_4070 0.58 -0.6
46,049 - EX28DRAFT_4070 0.77 +0.7
46,254 - +0.6
46,321 + -0.2
46,322 - -0.0
46,322 - +1.2
46,322 - +0.4
46,389 + -0.4
46,389 + -0.3
46,390 - -0.8
46,390 - +0.1
46,419 + -0.7
46,419 + -0.8
46,419 + -1.5
46,421 + +0.4
46,421 + -0.2
46,422 - +0.9
46,422 - -0.2
46,447 - EX28DRAFT_4071 0.10 +0.4
46,600 - EX28DRAFT_4071 0.27 +0.1
46,645 - EX28DRAFT_4071 0.31 -0.3
46,758 + EX28DRAFT_4071 0.43 +1.5
46,758 + EX28DRAFT_4071 0.43 -0.4
46,759 - EX28DRAFT_4071 0.43 +1.3
46,772 + EX28DRAFT_4071 0.45 -1.2
46,965 + EX28DRAFT_4071 0.65 +0.3
46,965 + EX28DRAFT_4071 0.65 -0.2
46,966 - EX28DRAFT_4071 0.65 +0.2
46,966 - EX28DRAFT_4071 0.65 +0.9
47,131 + EX28DRAFT_4071 0.83 +0.6
47,131 + EX28DRAFT_4071 0.83 +0.3
47,161 - EX28DRAFT_4071 0.86 +0.3
47,209 + -0.1
47,224 + +0.6
47,225 - +0.4
47,273 - +0.2
47,315 + -0.0
47,315 + +0.3
47,316 - +1.6
47,316 - +1.0
47,316 - +0.6
47,316 - +0.8
47,316 - +0.5
47,544 + EX28DRAFT_4072 0.37 -0.7
47,590 + EX28DRAFT_4072 0.43 +0.1
47,623 - EX28DRAFT_4072 0.48 -0.2
47,636 + EX28DRAFT_4072 0.50 -0.2
47,636 + EX28DRAFT_4072 0.50 -0.2
47,637 - EX28DRAFT_4072 0.50 +0.6
47,639 + EX28DRAFT_4072 0.51 +0.1
47,639 + EX28DRAFT_4072 0.51 -0.5
47,639 + EX28DRAFT_4072 0.51 -0.4
47,903 - EX28DRAFT_4072 0.89 +0.5
47,981 + +0.3
47,981 + -0.5
47,982 - +0.2
47,982 - +0.3
48,059 + -0.5
48,088 + +0.4
48,088 + +0.4
48,089 - -0.2
48,118 + -0.1
48,147 - +1.0
48,170 + -0.9

Or see this region's nucleotide sequence