Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4060 and EX28DRAFT_4061 are separated by 181 nucleotides EX28DRAFT_4061 and EX28DRAFT_4062 are separated by 71 nucleotides
EX28DRAFT_4060: EX28DRAFT_4060 - Neutral trehalase, at 34,133 to 35,782
_4060
EX28DRAFT_4061: EX28DRAFT_4061 - NADPH-glutathione reductase (EC 1.8.1.7), at 35,964 to 37,316
_4061
EX28DRAFT_4062: EX28DRAFT_4062 - Protein involved in catabolism of external DNA, at 37,388 to 38,230
_4062
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 35.130 kb on + strand, within EX28DRAFT_4060 at 35.131 kb on - strand, within EX28DRAFT_4060 at 35.133 kb on + strand, within EX28DRAFT_4060 at 35.133 kb on + strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.156 kb on - strand, within EX28DRAFT_4060 at 35.156 kb on - strand, within EX28DRAFT_4060 at 35.164 kb on - strand, within EX28DRAFT_4060 at 35.250 kb on + strand, within EX28DRAFT_4060 at 35.250 kb on + strand, within EX28DRAFT_4060 at 35.251 kb on - strand, within EX28DRAFT_4060 at 35.266 kb on - strand, within EX28DRAFT_4060 at 35.266 kb on - strand, within EX28DRAFT_4060 at 35.298 kb on + strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.335 kb on + strand, within EX28DRAFT_4060 at 35.336 kb on - strand, within EX28DRAFT_4060 at 35.336 kb on - strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.416 kb on - strand, within EX28DRAFT_4060 at 35.416 kb on - strand, within EX28DRAFT_4060 at 35.427 kb on + strand, within EX28DRAFT_4060 at 35.557 kb on + strand, within EX28DRAFT_4060 at 35.718 kb on + strand at 35.766 kb on - strand at 35.837 kb on - strand at 35.837 kb on - strand at 35.839 kb on - strand at 35.844 kb on + strand at 35.844 kb on + strand at 35.875 kb on - strand at 35.921 kb on + strand at 35.922 kb on - strand at 36.421 kb on + strand, within EX28DRAFT_4061 at 36.466 kb on + strand, within EX28DRAFT_4061 at 36.722 kb on + strand, within EX28DRAFT_4061 at 36.998 kb on + strand, within EX28DRAFT_4061 at 37.120 kb on + strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.124 kb on + strand, within EX28DRAFT_4061 at 37.125 kb on - strand, within EX28DRAFT_4061 at 37.297 kb on + strand at 37.612 kb on + strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.681 kb on - strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 38.049 kb on + strand, within EX28DRAFT_4062 at 38.253 kb on - strand at 38.258 kb on + strand at 38.293 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.312 kb on + strand at 38.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 35,130 + EX28DRAFT_4060 0.60 +0.3 35,131 - EX28DRAFT_4060 0.60 -1.8 35,133 + EX28DRAFT_4060 0.61 +0.0 35,133 + EX28DRAFT_4060 0.61 +0.3 35,134 - EX28DRAFT_4060 0.61 -0.1 35,134 - EX28DRAFT_4060 0.61 -0.1 35,134 - EX28DRAFT_4060 0.61 +0.1 35,134 - EX28DRAFT_4060 0.61 -1.5 35,156 - EX28DRAFT_4060 0.62 -0.1 35,156 - EX28DRAFT_4060 0.62 -0.0 35,164 - EX28DRAFT_4060 0.62 +0.2 35,250 + EX28DRAFT_4060 0.68 +0.2 35,250 + EX28DRAFT_4060 0.68 +0.3 35,251 - EX28DRAFT_4060 0.68 +0.3 35,266 - EX28DRAFT_4060 0.69 +0.5 35,266 - EX28DRAFT_4060 0.69 -0.7 35,298 + EX28DRAFT_4060 0.71 +0.0 35,299 - EX28DRAFT_4060 0.71 -0.3 35,299 - EX28DRAFT_4060 0.71 +0.1 35,299 - EX28DRAFT_4060 0.71 -2.3 35,335 + EX28DRAFT_4060 0.73 +0.4 35,336 - EX28DRAFT_4060 0.73 +1.0 35,336 - EX28DRAFT_4060 0.73 -0.0 35,415 + EX28DRAFT_4060 0.78 -0.3 35,415 + EX28DRAFT_4060 0.78 -0.4 35,415 + EX28DRAFT_4060 0.78 +1.7 35,416 - EX28DRAFT_4060 0.78 -0.1 35,416 - EX28DRAFT_4060 0.78 +1.1 35,427 + EX28DRAFT_4060 0.78 -0.3 35,557 + EX28DRAFT_4060 0.86 +0.9 35,718 + -1.5 35,766 - +0.2 35,837 - +0.1 35,837 - -0.1 35,839 - -0.3 35,844 + +0.6 35,844 + -0.0 35,875 - -0.5 35,921 + +0.1 35,922 - -0.3 36,421 + EX28DRAFT_4061 0.34 -3.7 36,466 + EX28DRAFT_4061 0.37 -1.8 36,722 + EX28DRAFT_4061 0.56 -2.5 36,998 + EX28DRAFT_4061 0.76 -3.2 37,120 + EX28DRAFT_4061 0.85 -1.9 37,121 - EX28DRAFT_4061 0.86 -3.2 37,121 - EX28DRAFT_4061 0.86 -3.3 37,121 - EX28DRAFT_4061 0.86 -4.1 37,124 + EX28DRAFT_4061 0.86 -2.3 37,125 - EX28DRAFT_4061 0.86 -3.3 37,297 + -0.5 37,612 + EX28DRAFT_4062 0.27 +0.6 37,657 - EX28DRAFT_4062 0.32 +0.8 37,657 - EX28DRAFT_4062 0.32 -0.8 37,681 - EX28DRAFT_4062 0.35 +0.0 37,989 + EX28DRAFT_4062 0.71 +1.5 37,989 + EX28DRAFT_4062 0.71 -0.8 37,990 - EX28DRAFT_4062 0.71 -0.4 37,990 - EX28DRAFT_4062 0.71 -0.3 38,049 + EX28DRAFT_4062 0.78 +0.0 38,253 - -1.3 38,258 + +1.0 38,293 - -0.3 38,311 - -0.1 38,311 - -0.4 38,311 - -0.4 38,312 + +0.2 38,313 - +0.3
Or see this region's nucleotide sequence