Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4038 and EX28DRAFT_4039 are separated by 48 nucleotides EX28DRAFT_4039 and EX28DRAFT_4040 overlap by 8 nucleotides EX28DRAFT_4040 and EX28DRAFT_4041 overlap by 4 nucleotides
EX28DRAFT_4038: EX28DRAFT_4038 - Glycosyl hydrolases family 8, at 2,418 to 3,410
_4038
EX28DRAFT_4039: EX28DRAFT_4039 - cellulose synthase operon protein YhjU, at 3,459 to 5,138
_4039
EX28DRAFT_4040: EX28DRAFT_4040 - celllulose biosynthesis operon protein BcsF/YhjT, at 5,131 to 5,325
_4040
EX28DRAFT_4041: EX28DRAFT_4041 - cellulose biosynthesis protein BcsE, at 5,322 to 6,884
_4041
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -1
0
1
2 at 2.505 kb on + strand at 2.506 kb on - strand at 2.689 kb on - strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.866 kb on - strand, within EX28DRAFT_4038 at 2.907 kb on - strand, within EX28DRAFT_4038 at 2.941 kb on - strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.133 kb on - strand, within EX28DRAFT_4038 at 3.157 kb on - strand, within EX28DRAFT_4038 at 3.277 kb on - strand, within EX28DRAFT_4038 at 3.363 kb on + strand at 3.363 kb on + strand at 3.364 kb on - strand at 3.366 kb on + strand at 3.408 kb on + strand at 3.453 kb on - strand at 3.460 kb on + strand at 3.460 kb on + strand at 3.502 kb on + strand at 3.502 kb on + strand at 3.503 kb on - strand at 3.503 kb on - strand at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.911 kb on - strand, within EX28DRAFT_4039 at 3.969 kb on - strand, within EX28DRAFT_4039 at 4.243 kb on + strand, within EX28DRAFT_4039 at 4.472 kb on + strand, within EX28DRAFT_4039 at 4.472 kb on + strand, within EX28DRAFT_4039 at 4.704 kb on - strand, within EX28DRAFT_4039 at 4.704 kb on - strand, within EX28DRAFT_4039 at 4.825 kb on + strand, within EX28DRAFT_4039 at 4.825 kb on + strand, within EX28DRAFT_4039 at 4.866 kb on - strand, within EX28DRAFT_4039 at 4.892 kb on + strand, within EX28DRAFT_4039 at 4.893 kb on - strand, within EX28DRAFT_4039 at 4.923 kb on + strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.926 kb on - strand, within EX28DRAFT_4039 at 4.951 kb on - strand, within EX28DRAFT_4039 at 4.951 kb on - strand, within EX28DRAFT_4039 at 5.024 kb on - strand at 5.060 kb on - strand at 5.090 kb on - strand at 5.120 kb on + strand at 5.121 kb on - strand at 5.122 kb on + strand at 5.122 kb on + strand at 5.123 kb on - strand at 5.127 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.192 kb on - strand, within EX28DRAFT_4040 at 5.192 kb on - strand, within EX28DRAFT_4040 at 5.195 kb on + strand, within EX28DRAFT_4040 at 5.195 kb on + strand, within EX28DRAFT_4040 at 5.206 kb on - strand, within EX28DRAFT_4040 at 5.208 kb on + strand, within EX28DRAFT_4040 at 5.235 kb on + strand, within EX28DRAFT_4040 at 5.242 kb on + strand, within EX28DRAFT_4040 at 5.258 kb on + strand, within EX28DRAFT_4040 at 5.259 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.294 kb on - strand, within EX28DRAFT_4040 at 5.501 kb on + strand, within EX28DRAFT_4041 at 5.501 kb on + strand, within EX28DRAFT_4041 at 5.505 kb on - strand, within EX28DRAFT_4041 at 5.537 kb on + strand, within EX28DRAFT_4041 at 5.667 kb on + strand, within EX28DRAFT_4041 at 5.667 kb on + strand, within EX28DRAFT_4041 at 5.668 kb on - strand, within EX28DRAFT_4041 at 5.847 kb on - strand, within EX28DRAFT_4041 at 5.939 kb on + strand, within EX28DRAFT_4041 at 5.990 kb on + strand, within EX28DRAFT_4041 at 5.990 kb on + strand, within EX28DRAFT_4041 at 6.039 kb on + strand, within EX28DRAFT_4041 at 6.040 kb on - strand, within EX28DRAFT_4041
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,505 + +0.2 2,506 - -0.3 2,689 - EX28DRAFT_4038 0.27 +0.1 2,699 + EX28DRAFT_4038 0.28 -0.4 2,699 + EX28DRAFT_4038 0.28 -0.9 2,832 - EX28DRAFT_4038 0.42 +0.0 2,832 - EX28DRAFT_4038 0.42 -0.3 2,866 - EX28DRAFT_4038 0.45 -0.9 2,907 - EX28DRAFT_4038 0.49 +0.6 2,941 - EX28DRAFT_4038 0.53 +0.1 3,132 + EX28DRAFT_4038 0.72 -0.0 3,132 + EX28DRAFT_4038 0.72 -1.1 3,132 + EX28DRAFT_4038 0.72 -0.1 3,133 - EX28DRAFT_4038 0.72 -0.1 3,157 - EX28DRAFT_4038 0.74 +0.3 3,277 - EX28DRAFT_4038 0.87 -0.4 3,363 + -0.1 3,363 + +0.9 3,364 - +0.4 3,366 + +0.3 3,408 + +0.4 3,453 - +0.5 3,460 + -0.7 3,460 + +0.2 3,502 + +0.7 3,502 + +0.5 3,503 - +0.3 3,503 - -0.7 3,908 + EX28DRAFT_4039 0.27 +0.4 3,908 + EX28DRAFT_4039 0.27 +1.0 3,909 - EX28DRAFT_4039 0.27 +1.1 3,909 - EX28DRAFT_4039 0.27 +0.7 3,909 - EX28DRAFT_4039 0.27 +1.2 3,911 - EX28DRAFT_4039 0.27 +0.2 3,969 - EX28DRAFT_4039 0.30 +0.7 4,243 + EX28DRAFT_4039 0.47 +0.5 4,472 + EX28DRAFT_4039 0.60 +0.7 4,472 + EX28DRAFT_4039 0.60 +0.5 4,704 - EX28DRAFT_4039 0.74 +0.7 4,704 - EX28DRAFT_4039 0.74 +1.9 4,825 + EX28DRAFT_4039 0.81 +0.3 4,825 + EX28DRAFT_4039 0.81 +0.7 4,866 - EX28DRAFT_4039 0.84 +0.6 4,892 + EX28DRAFT_4039 0.85 +1.4 4,893 - EX28DRAFT_4039 0.85 +0.8 4,923 + EX28DRAFT_4039 0.87 +0.9 4,924 - EX28DRAFT_4039 0.87 +1.0 4,924 - EX28DRAFT_4039 0.87 -0.4 4,924 - EX28DRAFT_4039 0.87 +1.5 4,926 - EX28DRAFT_4039 0.87 +0.4 4,951 - EX28DRAFT_4039 0.89 +0.6 4,951 - EX28DRAFT_4039 0.89 +0.9 5,024 - -0.9 5,060 - +0.1 5,090 - +0.6 5,120 + -0.6 5,121 - +0.1 5,122 + +0.6 5,122 + +1.2 5,123 - +0.7 5,127 - -0.3 5,133 - +1.2 5,133 - +1.3 5,133 - +0.2 5,133 - +0.8 5,192 - EX28DRAFT_4040 0.31 +0.5 5,192 - EX28DRAFT_4040 0.31 +0.3 5,195 + EX28DRAFT_4040 0.33 +0.8 5,195 + EX28DRAFT_4040 0.33 +0.8 5,206 - EX28DRAFT_4040 0.38 +0.6 5,208 + EX28DRAFT_4040 0.39 +0.6 5,235 + EX28DRAFT_4040 0.53 -0.8 5,242 + EX28DRAFT_4040 0.57 +0.4 5,258 + EX28DRAFT_4040 0.65 +0.7 5,259 - EX28DRAFT_4040 0.66 -0.2 5,262 - EX28DRAFT_4040 0.67 +0.7 5,262 - EX28DRAFT_4040 0.67 +1.2 5,262 - EX28DRAFT_4040 0.67 +1.8 5,294 - EX28DRAFT_4040 0.84 +0.8 5,501 + EX28DRAFT_4041 0.11 +0.6 5,501 + EX28DRAFT_4041 0.11 -0.7 5,505 - EX28DRAFT_4041 0.12 +0.8 5,537 + EX28DRAFT_4041 0.14 -0.6 5,667 + EX28DRAFT_4041 0.22 +1.1 5,667 + EX28DRAFT_4041 0.22 +0.2 5,668 - EX28DRAFT_4041 0.22 +1.0 5,847 - EX28DRAFT_4041 0.34 +0.5 5,939 + EX28DRAFT_4041 0.39 +0.9 5,990 + EX28DRAFT_4041 0.43 +0.4 5,990 + EX28DRAFT_4041 0.43 +0.4 6,039 + EX28DRAFT_4041 0.46 -0.0 6,040 - EX28DRAFT_4041 0.46 -0.1
Or see this region's nucleotide sequence