Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3891 and EX28DRAFT_3892 are separated by 40 nucleotides EX28DRAFT_3892 and EX28DRAFT_3893 are separated by 67 nucleotides EX28DRAFT_3893 and EX28DRAFT_3894 are separated by 125 nucleotides
EX28DRAFT_3891: EX28DRAFT_3891 - transcriptional regulator, TetR family, at 99,345 to 99,941
_3891
EX28DRAFT_3892: EX28DRAFT_3892 - orotate phosphoribosyltransferase (EC 2.4.2.10), at 99,982 to 100,623
_3892
EX28DRAFT_3893: EX28DRAFT_3893 - ribonuclease PH, at 100,691 to 101,407
_3893
EX28DRAFT_3894: EX28DRAFT_3894 - TIGR00255 family protein, at 101,533 to 102,396
_3894
Position (kb)
100
101
102 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 99.738 kb on - strand, within EX28DRAFT_3891 at 99.870 kb on - strand, within EX28DRAFT_3891 at 99.882 kb on + strand at 99.940 kb on - strand at 99.946 kb on + strand at 99.979 kb on + strand at 99.984 kb on - strand at 100.841 kb on + strand, within EX28DRAFT_3893 at 100.842 kb on - strand, within EX28DRAFT_3893 at 100.913 kb on - strand, within EX28DRAFT_3893 at 101.150 kb on - strand, within EX28DRAFT_3893 at 101.303 kb on - strand, within EX28DRAFT_3893 at 101.349 kb on + strand at 101.446 kb on + strand at 101.448 kb on + strand at 101.465 kb on + strand at 101.466 kb on - strand at 101.494 kb on + strand at 101.495 kb on - strand at 101.497 kb on - strand at 101.532 kb on + strand at 101.544 kb on + strand at 101.577 kb on + strand at 101.678 kb on + strand, within EX28DRAFT_3894 at 101.679 kb on - strand, within EX28DRAFT_3894 at 101.694 kb on + strand, within EX28DRAFT_3894 at 101.694 kb on + strand, within EX28DRAFT_3894 at 101.695 kb on - strand, within EX28DRAFT_3894 at 101.724 kb on + strand, within EX28DRAFT_3894 at 101.724 kb on + strand, within EX28DRAFT_3894 at 101.725 kb on - strand, within EX28DRAFT_3894 at 101.856 kb on + strand, within EX28DRAFT_3894 at 101.856 kb on + strand, within EX28DRAFT_3894 at 101.861 kb on + strand, within EX28DRAFT_3894 at 101.862 kb on - strand, within EX28DRAFT_3894 at 102.052 kb on - strand, within EX28DRAFT_3894 at 102.062 kb on + strand, within EX28DRAFT_3894 at 102.062 kb on + strand, within EX28DRAFT_3894 at 102.165 kb on + strand, within EX28DRAFT_3894 at 102.166 kb on - strand, within EX28DRAFT_3894 at 102.166 kb on - strand, within EX28DRAFT_3894 at 102.217 kb on + strand, within EX28DRAFT_3894 at 102.218 kb on - strand, within EX28DRAFT_3894 at 102.264 kb on + strand, within EX28DRAFT_3894 at 102.264 kb on + strand, within EX28DRAFT_3894 at 102.264 kb on + strand, within EX28DRAFT_3894
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 99,738 - EX28DRAFT_3891 0.66 -0.0 99,870 - EX28DRAFT_3891 0.88 -0.3 99,882 + -0.3 99,940 - +0.2 99,946 + -0.3 99,979 + -0.5 99,984 - +0.0 100,841 + EX28DRAFT_3893 0.21 +2.0 100,842 - EX28DRAFT_3893 0.21 -1.2 100,913 - EX28DRAFT_3893 0.31 +0.0 101,150 - EX28DRAFT_3893 0.64 +0.6 101,303 - EX28DRAFT_3893 0.85 +1.3 101,349 + -1.0 101,446 + -1.3 101,448 + +0.5 101,465 + -0.0 101,466 - -0.2 101,494 + -0.4 101,495 - +0.2 101,497 - +1.3 101,532 + -0.4 101,544 + -0.6 101,577 + -1.1 101,678 + EX28DRAFT_3894 0.17 -3.1 101,679 - EX28DRAFT_3894 0.17 -1.5 101,694 + EX28DRAFT_3894 0.19 +0.1 101,694 + EX28DRAFT_3894 0.19 -0.1 101,695 - EX28DRAFT_3894 0.19 +0.4 101,724 + EX28DRAFT_3894 0.22 -0.6 101,724 + EX28DRAFT_3894 0.22 -0.5 101,725 - EX28DRAFT_3894 0.22 -0.2 101,856 + EX28DRAFT_3894 0.37 -0.0 101,856 + EX28DRAFT_3894 0.37 -0.4 101,861 + EX28DRAFT_3894 0.38 -0.2 101,862 - EX28DRAFT_3894 0.38 +0.2 102,052 - EX28DRAFT_3894 0.60 -0.1 102,062 + EX28DRAFT_3894 0.61 -0.7 102,062 + EX28DRAFT_3894 0.61 -0.4 102,165 + EX28DRAFT_3894 0.73 -0.7 102,166 - EX28DRAFT_3894 0.73 -0.1 102,166 - EX28DRAFT_3894 0.73 -0.9 102,217 + EX28DRAFT_3894 0.79 -0.2 102,218 - EX28DRAFT_3894 0.79 +0.3 102,264 + EX28DRAFT_3894 0.85 -0.6 102,264 + EX28DRAFT_3894 0.85 -0.2 102,264 + EX28DRAFT_3894 0.85 -0.7
Or see this region's nucleotide sequence