Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3882 and EX28DRAFT_3883 overlap by 1 nucleotides EX28DRAFT_3883 and EX28DRAFT_3884 are separated by 3 nucleotides EX28DRAFT_3884 and EX28DRAFT_3885 are separated by 2 nucleotides
EX28DRAFT_3882: EX28DRAFT_3882 - 3-deoxy-D-manno-octulosonic-acid transferase, at 92,679 to 93,953
_3882
EX28DRAFT_3883: EX28DRAFT_3883 - Glycosyltransferases involved in cell wall biogenesis, at 93,953 to 94,723
_3883
EX28DRAFT_3884: EX28DRAFT_3884 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 94,727 to 95,206
_3884
EX28DRAFT_3885: EX28DRAFT_3885 - DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18), at 95,209 to 96,018
_3885
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1 at 93.930 kb on + strand at 94.182 kb on - strand, within EX28DRAFT_3883 at 94.355 kb on + strand, within EX28DRAFT_3883 at 94.376 kb on + strand, within EX28DRAFT_3883 at 94.664 kb on - strand at 95.199 kb on + strand at 95.199 kb on + strand at 95.200 kb on - strand at 95.205 kb on - strand at 95.205 kb on - strand at 95.210 kb on + strand at 95.309 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.334 kb on - strand, within EX28DRAFT_3885 at 95.397 kb on + strand, within EX28DRAFT_3885 at 95.398 kb on - strand, within EX28DRAFT_3885 at 95.398 kb on - strand, within EX28DRAFT_3885 at 95.401 kb on + strand, within EX28DRAFT_3885 at 95.401 kb on + strand, within EX28DRAFT_3885 at 95.404 kb on + strand, within EX28DRAFT_3885 at 95.413 kb on - strand, within EX28DRAFT_3885 at 95.507 kb on + strand, within EX28DRAFT_3885 at 95.508 kb on - strand, within EX28DRAFT_3885 at 95.512 kb on - strand, within EX28DRAFT_3885 at 95.538 kb on + strand, within EX28DRAFT_3885 at 95.595 kb on - strand, within EX28DRAFT_3885 at 95.595 kb on - strand, within EX28DRAFT_3885
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 93,930 + -0.2 94,182 - EX28DRAFT_3883 0.30 +0.3 94,355 + EX28DRAFT_3883 0.52 -1.5 94,376 + EX28DRAFT_3883 0.55 -1.3 94,664 - -2.2 95,199 + +0.3 95,199 + +0.1 95,200 - +0.4 95,205 - +0.0 95,205 - -0.6 95,210 + -0.6 95,309 + EX28DRAFT_3885 0.12 -0.1 95,311 + EX28DRAFT_3885 0.13 -0.3 95,311 + EX28DRAFT_3885 0.13 -0.1 95,311 + EX28DRAFT_3885 0.13 +0.3 95,311 + EX28DRAFT_3885 0.13 +0.1 95,311 + EX28DRAFT_3885 0.13 -0.2 95,312 - EX28DRAFT_3885 0.13 +0.9 95,312 - EX28DRAFT_3885 0.13 +0.3 95,312 - EX28DRAFT_3885 0.13 -1.4 95,312 - EX28DRAFT_3885 0.13 -0.8 95,312 - EX28DRAFT_3885 0.13 -0.5 95,312 - EX28DRAFT_3885 0.13 +0.5 95,312 - EX28DRAFT_3885 0.13 +0.3 95,334 - EX28DRAFT_3885 0.15 -0.9 95,397 + EX28DRAFT_3885 0.23 +0.3 95,398 - EX28DRAFT_3885 0.23 +0.2 95,398 - EX28DRAFT_3885 0.23 +1.4 95,401 + EX28DRAFT_3885 0.24 +1.4 95,401 + EX28DRAFT_3885 0.24 -0.1 95,404 + EX28DRAFT_3885 0.24 -0.2 95,413 - EX28DRAFT_3885 0.25 +0.4 95,507 + EX28DRAFT_3885 0.37 -0.1 95,508 - EX28DRAFT_3885 0.37 +0.3 95,512 - EX28DRAFT_3885 0.37 -0.2 95,538 + EX28DRAFT_3885 0.41 +0.1 95,595 - EX28DRAFT_3885 0.48 -0.5 95,595 - EX28DRAFT_3885 0.48 +0.8
Or see this region's nucleotide sequence