Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3778

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3776 and EX28DRAFT_3777 are separated by 28 nucleotidesEX28DRAFT_3777 and EX28DRAFT_3778 overlap by 14 nucleotidesEX28DRAFT_3778 and EX28DRAFT_3779 are separated by 196 nucleotidesEX28DRAFT_3779 and EX28DRAFT_3780 overlap by 4 nucleotides EX28DRAFT_3776: EX28DRAFT_3776 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 459,794 to 461,083 _3776 EX28DRAFT_3777: EX28DRAFT_3777 - transcriptional antiterminator, Rof, at 461,112 to 461,372 _3777 EX28DRAFT_3778: EX28DRAFT_3778 - Uncharacterised protein family (UPF0253), at 461,359 to 461,559 _3778 EX28DRAFT_3779: EX28DRAFT_3779 - Uncharacterized protein conserved in bacteria, at 461,756 to 462,301 _3779 EX28DRAFT_3780: EX28DRAFT_3780 - RF-1 domain, at 462,298 to 462,720 _3780 Position (kb) 461 462Strain fitness (log2 ratio) -2 -1 0 1at 461.164 kb on - strand, within EX28DRAFT_3777at 461.295 kb on + strand, within EX28DRAFT_3777at 461.295 kb on + strand, within EX28DRAFT_3777at 461.296 kb on - strand, within EX28DRAFT_3777at 461.330 kb on - strand, within EX28DRAFT_3777at 461.353 kb on + strandat 461.354 kb on - strandat 461.354 kb on - strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.358 kb on - strandat 461.402 kb on + strand, within EX28DRAFT_3778at 461.457 kb on + strand, within EX28DRAFT_3778at 461.495 kb on + strand, within EX28DRAFT_3778at 461.540 kb on - strandat 461.540 kb on - strandat 461.554 kb on - strandat 461.554 kb on - strandat 461.586 kb on - strandat 461.602 kb on - strandat 461.607 kb on + strandat 461.608 kb on - strandat 461.616 kb on - strandat 461.639 kb on + strandat 461.639 kb on - strandat 461.639 kb on - strandat 461.639 kb on - strandat 461.640 kb on + strandat 461.640 kb on + strandat 461.640 kb on + strandat 461.641 kb on - strandat 461.641 kb on - strandat 461.682 kb on + strandat 461.682 kb on + strandat 461.687 kb on - strandat 461.899 kb on + strand, within EX28DRAFT_3779at 461.899 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.904 kb on - strand, within EX28DRAFT_3779at 461.995 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.075 kb on - strand, within EX28DRAFT_3779at 462.448 kb on + strand, within EX28DRAFT_3780at 462.448 kb on + strand, within EX28DRAFT_3780at 462.451 kb on + strand, within EX28DRAFT_3780at 462.451 kb on + strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.453 kb on + strand, within EX28DRAFT_3780

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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461,164 - EX28DRAFT_3777 0.20 -0.4
461,295 + EX28DRAFT_3777 0.70 -2.2
461,295 + EX28DRAFT_3777 0.70 +1.1
461,296 - EX28DRAFT_3777 0.70 -0.1
461,330 - EX28DRAFT_3777 0.84 +0.5
461,353 + -0.0
461,354 - +0.3
461,354 - +0.9
461,357 + +0.8
461,357 + -0.4
461,357 + +0.0
461,357 + +0.1
461,358 - -0.2
461,402 + EX28DRAFT_3778 0.21 +0.4
461,457 + EX28DRAFT_3778 0.49 +1.2
461,495 + EX28DRAFT_3778 0.68 -0.1
461,540 - +0.4
461,540 - +1.1
461,554 - +0.3
461,554 - -0.0
461,586 - -0.1
461,602 - -0.6
461,607 + -1.4
461,608 - +0.0
461,616 - -0.5
461,639 + +0.8
461,639 - +0.5
461,639 - +0.0
461,639 - -0.2
461,640 + +0.0
461,640 + +0.2
461,640 + -0.2
461,641 - -0.9
461,641 - -0.2
461,682 + +0.0
461,682 + -0.1
461,687 - +0.0
461,899 + EX28DRAFT_3779 0.26 +0.5
461,899 + EX28DRAFT_3779 0.26 +0.0
461,903 + EX28DRAFT_3779 0.27 -0.4
461,903 + EX28DRAFT_3779 0.27 +1.6
461,903 + EX28DRAFT_3779 0.27 -0.7
461,904 - EX28DRAFT_3779 0.27 -2.0
461,995 - EX28DRAFT_3779 0.44 -0.2
462,032 - EX28DRAFT_3779 0.51 -0.4
462,032 - EX28DRAFT_3779 0.51 -0.1
462,075 - EX28DRAFT_3779 0.58 -0.0
462,448 + EX28DRAFT_3780 0.35 -0.4
462,448 + EX28DRAFT_3780 0.35 -0.2
462,451 + EX28DRAFT_3780 0.36 -0.0
462,451 + EX28DRAFT_3780 0.36 -0.1
462,452 - EX28DRAFT_3780 0.36 -0.6
462,452 - EX28DRAFT_3780 0.36 -0.4
462,452 - EX28DRAFT_3780 0.36 +0.9
462,452 - EX28DRAFT_3780 0.36 -0.6
462,452 - EX28DRAFT_3780 0.36 -0.3
462,453 + EX28DRAFT_3780 0.37 -0.4

Or see this region's nucleotide sequence